HL_8BIM_034

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

8BIM|1|0|A|1453, 8BIM|1|0|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BIM_034 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.1132

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8BIM|1|0|C|1451
8BIM|1|0|G|1452
8BIM|1|0|A|1453
8BIM|1|0|C|1454
8BIM|1|0|G|1455
8BIM|1|0|G|1456
8BIM|1|0|U|1457
8BIM|1|0|U|1458
8BIM|1|0|G|1459

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain K

50S ribosomal protein L17