HL_8BIM_046

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

8BIM|1|0|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BIM_046 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1394

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8BIM|1|0|G|1910
8BIM|1|0|U|1911
8BIM|1|0|A|1912
8BIM|1|0|A|1913
8BIM|1|0|C|1914
8BIM|1|0|U|1915
8BIM|1|0|A|1916
8BIM|1|0|U|1917
8BIM|1|0|A|1918
8BIM|1|0|A|1919
8BIM|1|0|C|1920

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain 4

Transfer RNA; tRNA