HL_8BIM_048

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8BIM|1|0|A|2030, 8BIM|1|0|A|2031, 8BIM|1|0|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BIM_048 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1209

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8BIM|1|0|G|2027
8BIM|1|0|U|2028
8BIM|1|0|G|2029
8BIM|1|0|A|2030
8BIM|1|0|A|2031
8BIM|1|0|G|2032
8BIM|1|0|A|2033
8BIM|1|0|U|2034
8BIM|1|0|G|2035
8BIM|1|0|C|2036

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain a

50S ribosomal protein L32