HL_8BIM_064

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8BIM|1|0|G|2751, 8BIM|1|0|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BIM_064 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1121

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8BIM|1|0|C|2745
8BIM|1|0|U|2746
8BIM|1|0|G|2747
8BIM|1|0|A|2748
8BIM|1|0|A|2749
8BIM|1|0|A|2750
8BIM|1|0|G|2751
8BIM|1|0|C|2752
8BIM|1|0|A|2753
8BIM|1|0|U|2754
8BIM|1|0|C|2755
8BIM|1|0|U|2756
8BIM|1|0|A|2757
8BIM|1|0|A|2758
8BIM|1|0|G|2759

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13

Chain e

50S ribosomal protein L36