HL_8BIP_007

3D structure

PDB id

8BIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

8BIP|1|1|G|218, 8BIP|1|1|A|219, 8BIP|1|1|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BIP_007 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.0696

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

8BIP|1|1|G|216
8BIP|1|1|U|217
8BIP|1|1|G|218
8BIP|1|1|A|219
8BIP|1|1|G|220
8BIP|1|1|A|221
8BIP|1|1|A|222
8BIP|1|1|U|223
8BIP|1|1|C|224

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4-A

Chain LY

60S ribosomal protein L26-A