3D structure

PDB id
8BIP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UCUUGAAACA
Length
10 nucleotides
Bulged bases
8BIP|1|1|C|648
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BIP_014 not in the Motif Atlas
Homologous match to HL_8C3A_014
Geometric discrepancy: 0.0908
The information below is about HL_8C3A_014
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_43993.1
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

8BIP|1|1|U|640
8BIP|1|1|C|641
8BIP|1|1|U|642
8BIP|1|1|U|643
8BIP|1|1|G|644
8BIP|1|1|A|645
8BIP|1|1|A|646
8BIP|1|1|A|647
8BIP|1|1|C|648
8BIP|1|1|A|649

Current chains

Chain 1
25S rRNA

Nearby chains

Chain LB
60S ribosomal protein L3
Chain La
60S ribosomal protein L28
Chain Le
60S ribosomal protein L32

Coloring options:


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