HL_8BIP_022

3D structure

PDB id

8BIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8BIP|1|1|C|959, 8BIP|1|1|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BIP_022 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1984

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8BIP|1|1|C|958
8BIP|1|1|C|959
8BIP|1|1|U|960
8BIP|1|1|C|961
8BIP|1|1|A|962
8BIP|1|1|G|963

Current chains

Chain 1

25S rRNA

Nearby chains

Chain La

60S ribosomal protein L28

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L42-A