HL_8BIP_023

3D structure

PDB id

8BIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCGAAAUGA

Length

9 nucleotides

Bulged bases

8BIP|1|1|U|1028

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BIP_023 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3628

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8BIP|1|1|U|1022
8BIP|1|1|C|1023
8BIP|1|1|G|1024
8BIP|1|1|A|1025
8BIP|1|1|A|1026
8BIP|1|1|A|1027
8BIP|1|1|U|1028
8BIP|1|1|G|1029
8BIP|1|1|A|1030

Current chains

Chain 1

25S rRNA

Nearby chains

Chain LJ

60S ribosomal protein L11-B