3D structure

PDB id
8BIP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGAUCA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BIP_067 not in the Motif Atlas
Homologous match to HL_8C3A_067
Geometric discrepancy: 0.107
The information below is about HL_8C3A_067
Detailed Annotation
Ribsomal LSU H95
Broad Annotation
Ribsomal LSU H95
Motif group
HL_65794.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
11

Unit IDs

8BIP|1|1|U|3068
8BIP|1|1|G|3069
8BIP|1|1|A|3070
8BIP|1|1|U|3071
8BIP|1|1|C|3072
8BIP|1|1|A|3073

Current chains

Chain 1
25S rRNA

Nearby chains

Chain LR
60S ribosomal protein L19-A
Chain LU
60S ribosomal protein L22-A
Chain Ld
60S ribosomal protein L31-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1737 s