HL_8BJQ_023

3D structure

PDB id

8BJQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCGAAAUGA

Length

9 nucleotides

Bulged bases

8BJQ|1|1|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BJQ_023 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3649

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8BJQ|1|1|U|1022
8BJQ|1|1|C|1023
8BJQ|1|1|G|1024
8BJQ|1|1|A|1025
8BJQ|1|1|A|1026
8BJQ|1|1|A|1027
8BJQ|1|1|U|1028
8BJQ|1|1|G|1029
8BJQ|1|1|A|1030

Current chains

Chain 1

25S rRNA

Nearby chains

Chain LJ

60S ribosomal protein L11-B