HL_8BN3_006

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

8BN3|1|1|U|210, 8BN3|1|1|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_006 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.071

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8BN3|1|1|C|208
8BN3|1|1|A|209
8BN3|1|1|U|210
8BN3|1|1|A|211
8BN3|1|1|G|212

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L4

RPL4A isoform 1

Chain N6

Large ribosomal subunit protein uL24A