3D structure

PDB id
8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CACCUUUG
Length
8 nucleotides
Bulged bases
8BN3|1|1|C|1762
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BN3_038 not in the Motif Atlas
Homologous match to HL_8P9A_150
Geometric discrepancy: 0.4778
The information below is about HL_8P9A_150
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_25967.2
Basepair signature
cWW-cWW-F-F-F
Number of instances in this motif group
3

Unit IDs

8BN3|1|1|C|1759
8BN3|1|1|A|1760
8BN3|1|1|C|1761
8BN3|1|1|C|1762
8BN3|1|1|U|1763
8BN3|1|1|U|1764
8BN3|1|1|U|1765
8BN3|1|1|G|1766

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain M9
60S ribosomal protein L19-A
Chain N2
60S ribosomal protein L22-A

Coloring options:


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