HL_8BN3_060

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_060 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.0891

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8BN3|1|1|C|2840
8BN3|1|1|G|2841
8BN3|1|1|U|2842
8BN3|1|1|U|2843
8BN3|1|1|C|2844
8BN3|1|1|A|2845
8BN3|1|1|U|2846
8BN3|1|1|A|2847
8BN3|1|1|G|2848

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M0

RPL10 isoform 1

Chain Q0

60S ribosomal protein L40-A