HL_8BN3_061

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8BN3|1|1|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_061 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.0695

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8BN3|1|1|A|2897
8BN3|1|1|G|2898
8BN3|1|1|C|2899
8BN3|1|1|A|2900
8BN3|1|1|G|2901
8BN3|1|1|A|2902
8BN3|1|1|A|2903
8BN3|1|1|U|2904

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L9

RPL9A isoform 1

Chain Q0

60S ribosomal protein L40-A