HL_8BN3_073

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

8BN3|1|2|U|158, 8BN3|1|2|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_073 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.1277

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BN3|1|2|G|154
8BN3|1|2|U|155
8BN3|1|2|A|156
8BN3|1|2|A|157
8BN3|1|2|U|158
8BN3|1|2|U|159
8BN3|1|2|C|160

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain S6

Small ribosomal subunit protein eS6A