HL_8BN3_078

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_078 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.1068

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8BN3|1|2|U|368
8BN3|1|2|A|369
8BN3|1|2|A|370
8BN3|1|2|G|371
8BN3|1|2|G|372
8BN3|1|2|G|373

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

Small ribosomal subunit protein uS17A

Chain D2

RPS22A isoform 1

Chain D3

40S ribosomal protein S23-A

Chain S2

RPS2 isoform 1

Chain S9

Small ribosomal subunit protein uS4A