HL_8BN3_084

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_084 not in the Motif Atlas

Homologous match to HL_8C3A_206

Geometric discrepancy: 0.0714

The information below is about HL_8C3A_206

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02837.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8BN3|1|2|C|569
8BN3|1|2|A|570
8BN3|1|2|G|571
8BN3|1|2|C|572
8BN3|1|2|C|573
8BN3|1|2|G|574

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain SM

STM1 isoform 1