Motif HL_02837.1 Version HL_02837.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8P9A_198 | 8P9A | 0.8201 | 0 | sR | SSU rRNA | U | 368 | A | 369 | A | 370 | G | 371 | G | 372 | G | 373 | cWW | |
| 2 | HL_7A0S_004 | 7A0S | 0.6883 | 0 | X | LSU rRNA | C | 133 | G | 134 | U | 135 | A | 136 | A | 137 | G | 138 | cWW | |
| 3 | HL_6CZR_216 | 6CZR | 0.2341 | 0 | GNRA variation | 1a | SSU rRNA | C | 506 | A | 507 | G | 508 | C | 509 | C | 510 | G7M | 511 | cWW |
| 4 | HL_4LFB_033 | 4LFB | 0.0889 | 0 | GNRA variation | A | SSU rRNA | C | 522 | A | 523 | G | 524 | C | 525 | C | 526 | 7MG | 527 | cWW |
| 5 | HL_5J7L_205 | 5J7L | 0.0000 | 0 | GNRA variation | AA | SSU rRNA | C | 522 | A | 523 | G | 524 | C | 525 | C | 526 | G7M | 527 | cWW |
| 6 | HL_8C3A_200 | 8C3A | 0.3546 | 0 | GNRA variation | CM | SSU rRNA | U | 366 | A | 367 | A | 368 | G | 369 | G | 370 | G | 371 | cWW |
| 7 | HL_3AM1_002 | 3AM1 | 0.3755 | 0 | GNRA variation | B | ASL-truncated tRNA | C | 32 | U | 33 | U | 34 | C | 35 | G | 36 | G | 37 | cWW |
| 8 | HL_8C3A_206 | 8C3A | 0.4218 | 0 | GNRA variation | CM | SSU rRNA | C | 567 | A | 568 | G | 569 | C | 570 | C | 571 | G | 572 | cWW |
| 9 | HL_8P9A_204 | 8P9A | 0.4296 | 0 | GNRA variation (H) | sR | SSU rRNA | C | 569 | A | 570 | G | 571 | C | 572 | C | 573 | G | 574 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAGGG | 2 |
| CAGCC(G7M) | 2 |
| CAGCCG | 2 |
| CGUAAG | 1 |
| CAGCC(7MG) | 1 |
| CUUCGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCC | 5 |
| AAGG | 2 |
| GUAA | 1 |
| UUCG | 1 |
- Annotations
-
- GNRA variation (6)
- (2)
- GNRA variation (H) (1)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.09 | Avg 0.50 | Max 0.96
Coloring options: