HL_8BN3_090

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_090 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1526

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8BN3|1|2|A|900
8BN3|1|2|G|901
8BN3|1|2|G|902
8BN3|1|2|U|903
8BN3|1|2|G|904
8BN3|1|2|A|905
8BN3|1|2|A|906
8BN3|1|2|A|907
8BN3|1|2|U|908
8BN3|1|2|U|909

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C4

40S ribosomal protein S14-B

Chain D6

RPS26B isoform 1