HL_8BN3_103
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 8BN3|1|2|U|1544, 8BN3|1|2|U|1545, 8BN3|1|2|A|1546
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BN3_103 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.0889
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8BN3|1|2|A|1537
8BN3|1|2|U|1538
8BN3|1|2|U|1539
8BN3|1|2|G|1540
8BN3|1|2|U|1541
8BN3|1|2|A|1542
8BN3|1|2|A|1543
8BN3|1|2|U|1544
8BN3|1|2|U|1545
8BN3|1|2|A|1546
8BN3|1|2|U|1547
8BN3|1|2|U|1548
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C5
- RPS15 isoform 1
- Chain C8
- 40S ribosomal protein S18-A
- Chain C9
- 40S ribosomal protein S19-A
- Chain D9
- RPS29A isoform 1
- Chain SM
- STM1 isoform 1
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