3D structure

PDB id
8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CACAUUG
Length
7 nucleotides
Bulged bases
8BN3|1|4|A|111, 8BN3|1|4|U|113
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BN3_110 not in the Motif Atlas
Homologous match to HL_5TBW_075
Geometric discrepancy: 0.0835
The information below is about HL_5TBW_075
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_22523.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
13

Unit IDs

8BN3|1|4|C|108
8BN3|1|4|A|109
8BN3|1|4|C|110
8BN3|1|4|A|111
8BN3|1|4|U|112
8BN3|1|4|U|113
8BN3|1|4|G|114

Current chains

Chain 4
5.8S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain N5
60S ribosomal protein L25
Chain O7
Large ribosomal subunit protein eL37A
Chain O9
60S ribosomal protein L39

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