HL_8BN3_123

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

8BN3|1|2|G|1230, 8BN3|1|2|G|1232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_123 not in the Motif Atlas

Homologous match to HL_8CRE_217

Geometric discrepancy: 0.227

The information below is about HL_8CRE_217

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8BN3|1|2|A|1225
8BN3|1|2|U|1226
8BN3|1|2|U|1227
8BN3|1|2|G|1228
8BN3|1|2|A|1229
8BN3|1|2|G|1230
8BN3|1|2|A|1231
8BN3|1|2|G|1232
8BN3|1|2|C|1233
8BN3|1|2|U|1234

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain C5

RPS15 isoform 1

Chain E1

RPS31 isoform 1