HL_8BPO_007
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGUGAGGC
- Length
- 9 nucleotides
- Bulged bases
- 8BPO|1|A1|G|232
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BPO_007 not in the Motif Atlas
- Homologous match to HL_5TBW_007
- Geometric discrepancy: 0.1319
- The information below is about HL_5TBW_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
8BPO|1|A1|G|230
8BPO|1|A1|U|231
8BPO|1|A1|G|232
8BPO|1|A1|U|233
8BPO|1|A1|G|234
8BPO|1|A1|A|235
8BPO|1|A1|G|236
8BPO|1|A1|G|237
8BPO|1|A1|C|238
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain C1
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C2
- 60S ribosomal protein L4
- Chain X2
- Ribosomal protein L26
Coloring options: