HL_8BPO_014

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAGACCCG

Length

9 nucleotides

Bulged bases

8BPO|1|A1|C|967

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BPO_014 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1637

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8BPO|1|A1|C|962
8BPO|1|A1|G|963
8BPO|1|A1|A|964
8BPO|1|A1|G|965
8BPO|1|A1|A|966
8BPO|1|A1|C|967
8BPO|1|A1|C|968
8BPO|1|A1|C|969
8BPO|1|A1|G|970

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain C2

60S ribosomal protein L4

Chain E2

60S ribosomal protein L6

Chain F2

60S ribosomal protein L7