HL_8BPO_020
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CCUUCCAGUCCG
- Length
- 12 nucleotides
- Bulged bases
- 8BPO|1|A1|C|1437, 8BPO|1|A1|U|1438
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BPO_020 not in the Motif Atlas
- Geometric match to HL_2Y8W_001
- Geometric discrepancy: 0.3559
- The information below is about HL_2Y8W_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40612.1
- Basepair signature
- cWW
- Number of instances in this motif group
- 3
Unit IDs
8BPO|1|A1|C|1436
8BPO|1|A1|C|1437
8BPO|1|A1|U|1438
8BPO|1|A1|U|1440
8BPO|1|A1|C|1441
8BPO|1|A1|C|1442
8BPO|1|A1|A|1443
8BPO|1|A1|G|1444
8BPO|1|A1|U|1445
8BPO|1|A1|C|1446
8BPO|1|A1|C|1447
8BPO|1|A1|G|1448
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain C2
- 60S ribosomal protein L4
- Chain F2
- 60S ribosomal protein L7
- Chain P2
- Ribosomal protein L18
- Chain a2
- 60S ribosomal protein L29
Coloring options: