HL_8BPO_025

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8BPO|1|A1|C|1676, 8BPO|1|A1|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BPO_025 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.0476

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8BPO|1|A1|C|1675
8BPO|1|A1|C|1676
8BPO|1|A1|U|1677
8BPO|1|A1|C|1678
8BPO|1|A1|A|1679
8BPO|1|A1|G|1680

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain Z2

60S ribosomal protein L27a

Chain a2

60S ribosomal protein L29

Chain n2

60S ribosomal protein L36a-like