HL_8BPO_048

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUGC

Length

5 nucleotides

Bulged bases

8BPO|1|A1|G|3615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BPO_048 not in the Motif Atlas

Homologous match to HL_8C3A_045

Geometric discrepancy: 0.1905

The information below is about HL_8C3A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8BPO|1|A1|G|3614
8BPO|1|A1|G|3615
8BPO|1|A1|U|3616
8BPO|1|A1|G|3617
8BPO|1|A1|C|3618

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain Q2

60S ribosomal protein L19

Chain V2

Ribosomal protein L24