HL_8BPO_052

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

8BPO|1|A1|A|3760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BPO_052 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.1778

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8BPO|1|A1|G|3757
8BPO|1|A1|U|3758
8BPO|1|A1|A|3759
8BPO|1|A1|A|3760
8BPO|1|A1|C|3761
8BPO|1|A1|U|3762
8BPO|1|A1|A|3763
8BPO|1|A1|U|3764
8BPO|1|A1|G|3765
8BPO|1|A1|A|3766
8BPO|1|A1|C|3767

Current chains

Chain A1

28S ribosomal RNA

Nearby chains