HL_8BPO_064

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8BPO|1|A1|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BPO_064 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.092

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8BPO|1|A1|A|4474
8BPO|1|A1|G|4475
8BPO|1|A1|C|4476
8BPO|1|A1|A|4477
8BPO|1|A1|G|4478
8BPO|1|A1|A|4479
8BPO|1|A1|A|4480
8BPO|1|A1|U|4481

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain H2

60S ribosomal protein L9

Chain l2

Ubiquitin-60S ribosomal protein L40