HL_8BPO_076
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAGCUAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BPO_076 not in the Motif Atlas
- Geometric match to HL_7RQB_001
- Geometric discrepancy: 0.1695
- The information below is about HL_7RQB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99167.2
- Basepair signature
- cWW-F-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
8BPO|1|C1|C|47
8BPO|1|C1|A|48
8BPO|1|C1|G|49
8BPO|1|C1|C|50
8BPO|1|C1|U|51
8BPO|1|C1|A|52
8BPO|1|C1|G|53
8BPO|1|C1|C|54
8BPO|1|C1|U|55
8BPO|1|C1|G|56
Current chains
- Chain C1
- 5.8S ribosomal RNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain W2
- Ribosomal_L23eN domain-containing protein
- Chain g2
- 60S ribosomal protein L35
- Chain i2
- Ribosomal protein L37
- Chain k2
- 60S ribosomal protein L39-like
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