HL_8BPO_082

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BPO_082 not in the Motif Atlas

Homologous match to HL_8P9A_140

Geometric discrepancy: 0.2894

The information below is about HL_8P9A_140

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8BPO|1|A1|U|2006
8BPO|1|A1|G|2007
8BPO|1|A1|U|2008
8BPO|1|A1|A|2009
8BPO|1|A1|A|2010
8BPO|1|A1|C|2011
8BPO|1|A1|A|2012
8BPO|1|A1|A|2013

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain l2

Ubiquitin-60S ribosomal protein L40

Chain q2

60S acidic ribosomal protein P0

Chain r2

60S ribosomal protein L12