HL_8BQD_016

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGGCCGGUCGGAUUUCCA

Length

18 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BQD|1|2|U|650
8BQD|1|2|G|651
8BQD|1|2|G|652
8BQD|1|2|C|653
8BQD|1|2|C|654
8BQD|1|2|G|655
8BQD|1|2|G|656
8BQD|1|2|U|657
8BQD|1|2|C|658
8BQD|1|2|G|676
8BQD|1|2|G|677
8BQD|1|2|A|678
8BQD|1|2|U|679
8BQD|1|2|U|680
8BQD|1|2|U|681
8BQD|1|2|C|682
8BQD|1|2|C|683
8BQD|1|2|A|684

Current chains

Chain 2

18S rRNA

Nearby chains

Chain W

40S ribosomal protein S9-A