RNA 3D Hub //

8BQD Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8BQD_0011/2/7:17No text annotation
homologous
HL_4V88_186
NA
HL_8BQD_0101/2/393:404No text annotation
homologous
HL_4V88_195
NA
HL_8BQD_0111/2/414:419UNCG
homologous
HL_4V88_196
NA
HL_8BQD_0151/2/569:574GNRA variation
homologous
HL_4V88_200
NA
HL_8BQD_0221/2/937:942GNRA
homologous
HL_4V88_207
NA
HL_8BQD_0261/2/1121:1126GNRA
homologous
HL_4V88_211
NA
HL_8BQD_0381/BQ/38:45No text annotation
geometric
HL_5J7L_139
NA
HL_8BQD_0401/BQ/90:96No text annotation
homologous
HL_8C3A_003
NA
HL_8BQD_0431/BQ/208:212No text annotation
homologous
HL_5TBW_006
NA
HL_8BQD_0441/BQ/216:224T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_8BQD_0451/BQ/278:287No text annotation
homologous
HL_8C3A_008
NA
HL_8BQD_0471/BQ/357:362GNRA
homologous
HL_8C3A_010
NA
HL_8BQD_0511/BQ/640:649T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_8BQD_0521/BQ/686:694No text annotation
homologous
HL_5TBW_015
NA
HL_8BQD_0561/BQ/844:849GNRA
homologous
HL_5TBW_019
NA
HL_8BQD_0571/BQ/876:885No text annotation
homologous
HL_5TBW_020
NA
HL_8BQD_0581/BQ/910:918No text annotation
homologous
HL_5TBW_021
NA
HL_8BQD_0591/BQ/958:963Externally structured
homologous
HL_8C3A_022
NA
HL_8BQD_0621/BQ/1126:1132GNRA
homologous
HL_8C3A_025
NA
HL_8BQD_0631/BQ/1148:1155No text annotation
homologous
HL_8C3A_026
NA
HL_8BQD_0671/BQ/1403:1408GNRA
homologous
HL_8C3A_030
NA
HL_8BQD_0681/BQ/1462:1470T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_8BQD_0691/BQ/1506:1512Pseudoknot geometry with 3' bulge
homologous
HL_8C3A_032
NA
HL_8BQD_0701/BQ/1544:1549GNRA variation
homologous
HL_8C3A_033
NA
HL_8BQD_0721/BQ/1599:1608No text annotation
homologous
HL_5TBW_035
NA
HL_8BQD_0731/BQ/1634:1639GNRA
homologous
HL_8C3A_036
NA
HL_8BQD_0741/BQ/1680:1688No text annotation
homologous
HL_5TBW_037
NA
HL_8BQD_0751/BQ/1719:1725No text annotation
homologous
HL_5TBW_038
NA
HL_8BQD_0771/BQ/1792:1796Mini UNCG
homologous
HL_5TBW_040
NA
HL_8BQD_0781/BQ/1844:1851No text annotation
homologous
HL_8C3A_041
NA
HL_8BQD_0791/BQ/1862:1868GNRA
homologous
HL_5TBW_042
NA
HL_8BQD_0801/BQ/1923:1928UNCG
geometric
HL_5Y85_004
HL_61337.2
HL_8BQD_0821/BQ/2110:2114No text annotation
homologous
HL_8C3A_045
NA
HL_8BQD_0831/BQ/2135:2145No text annotation
homologous
HL_8C3A_046
NA
HL_8BQD_0841/BQ/2164:2170GNRA
homologous
HL_8C3A_047
NA
HL_8BQD_0851/BQ/2220:2225GNRA
homologous
HL_5TBW_048
NA
HL_8BQD_0871/BQ/2292:2300No text annotation
homologous
HL_5TBW_050
NA
HL_8BQD_0881/BQ/2369:2378No text annotation
homologous
HL_5TBW_051
NA
HL_8BQD_0921/BQ/2616:2624No text annotation
homologous
HL_5TBW_054
NA
HL_8BQD_0931/BQ/2633:2645No text annotation
homologous
HL_8C3A_056
NA
HL_8BQD_0941/BQ/2673:2681No text annotation
homologous
HL_5TBW_056
NA
HL_8BQD_0951/BQ/2693:2700Pseudoknot geometry
homologous
HL_5TBW_057
NA
HL_8BQD_0961/BQ/2724:2732No text annotation
homologous
HL_8C3A_059
NA
HL_8BQD_0991/BQ/2840:2848No text annotation
homologous
HL_5TBW_061
NA
HL_8BQD_1011/BQ/2920:2926No text annotation
homologous
HL_5TBW_063
NA
HL_8BQD_1021/BQ/2963:2968GNRA
homologous
HL_5TBW_064
NA
HL_8BQD_1041/BQ/3068:3073Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_8BQD_1051/BQ/3110:3124No text annotation
homologous
HL_8C3A_068
NA
HL_8BQD_1071/BQ/3240:3247No text annotation
homologous
HL_5TBW_069
NA
HL_8BQD_1081/BQ/3303:3311No text annotation
homologous
HL_8C3A_071
NA
HL_8BQD_1111/BR/88:93GNRA
homologous
HL_5TBW_186
NA
HL_8BQD_1121/BS/47:56Pseudoknot with intercalation
geometric
HL_7A0S_001
HL_17803.1
HL_8BQD_1131/BS/69:89No text annotation
homologous
HL_8P4V_073
NA
HL_8BQD_1141/BS/108:114No text annotation
homologous
HL_5TBW_075
NA
HL_8BQD_1151/BS/124:129No text annotation
homologous
HL_5TBW_076
NA

Problematic loops

#loop idProblemSequence
HL_8BQD_002No text annotation
HL_8BQD_003GNRA related
HL_8BQD_004No text annotation
HL_8BQD_005No text annotation
HL_8BQD_006T-loop with 1 bulged base
HL_8BQD_007Mini UNCG
HL_8BQD_008GNRA related
HL_8BQD_009No text annotation
HL_8BQD_012No text annotation
HL_8BQD_013No text annotation
HL_8BQD_116No text annotation
HL_8BQD_014No text annotation
HL_8BQD_016No text annotation
HL_8BQD_017No text annotation
HL_8BQD_018No text annotation
HL_8BQD_019No text annotation
HL_8BQD_020Pseudoknot geometry
HL_8BQD_021No text annotation
HL_8BQD_023No text annotation
HL_8BQD_024No text annotation
HL_8BQD_025GNRA
HL_8BQD_027No text annotation
HL_8BQD_028Anticodon loop related
HL_8BQD_029GNRA
HL_8BQD_030No text annotation
HL_8BQD_031No text annotation
HL_8BQD_032GNRA
HL_8BQD_033GNRA
HL_8BQD_034No text annotation
HL_8BQD_035No text annotation
HL_8BQD_036No text annotation
HL_8BQD_037GNRA variation
HL_8BQD_039No text annotation
HL_8BQD_041No text annotation
HL_8BQD_042T-loop with 2 stacked bulged bases
HL_8BQD_046Pseudoknot geometry
HL_8BQD_048GNRA
HL_8BQD_049No text annotation
HL_8BQD_050GNRA
HL_8BQD_053GNRA
HL_8BQD_054GNRA
HL_8BQD_055No text annotation
HL_8BQD_060GNRA
HL_8BQD_061No text annotation
HL_8BQD_064No text annotation
HL_8BQD_065No text annotation
HL_8BQD_066No text annotation
HL_8BQD_071No text annotation
HL_8BQD_076No text annotation
HL_8BQD_081No text annotation
HL_8BQD_086No text annotation
HL_8BQD_089No text annotation
HL_8BQD_090No text annotation
HL_8BQD_091Externally structured
HL_8BQD_097GNRA
HL_8BQD_098Pseudoknot geometry
HL_8BQD_100No text annotation
HL_8BQD_103GNRA
HL_8BQD_106No text annotation
HL_8BQD_109Mini UNCG
HL_8BQD_110No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8BQD_0011/2/24:26,
1/2/600:601		Single bulged C
homologous
IL_4V88_384
NA
IL_8BQD_0031/2/37:41,
1/2/466:471		Triple sheared related
geometric
IL_4V88_386
NA
IL_8BQD_0041/2/42:48,
1/2/431:433		No text annotation
homologous
IL_4V88_387
NA
IL_8BQD_0051/2/50:52,
1/2/428:429		Minor groove platform
homologous
IL_4V88_388
NA
IL_8BQD_0081/2/109:112,
1/2/302:305		Tandem non-canonical cWW pairs
homologous
IL_4V88_391
NA
IL_8BQD_0191/2/311:316,
1/2/348:355		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_8BQD_0201/2/318:323,
1/2/345:346		No text annotation
homologous
IL_4V88_403
NA
IL_8BQD_0221/2/389:391,
1/2/406:408		Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_8BQD_0231/2/411:413,
1/2/420:422		Isolated near basepair
homologous
IL_4V88_406
NA
IL_8BQD_0321/2/562:568,
1/2/575:583		Kink-turn related
homologous
IL_4V88_415
NA
IL_8BQD_0331/2/616:622,
1/2/1104:1105		No text annotation
homologous
IL_4V88_416
NA
IL_8BQD_0351/2/627:631,
1/2/968:972		tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_8BQD_0391/2/751:759,
1/2/791:798		No text annotation
homologous
IL_4V88_425
NA
IL_8BQD_0431/2/874:878,
1/2/950:953		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_8BQD_0491/2/1041:1044,
1/2/1074:1077		Tandem non-canonical cWW pairs
homologous
IL_4V88_438
NA
IL_8BQD_0511/2/1111:1118,
1/2/1129:1134		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_8BQD_0521/2/1146:1147,
1/2/1630:1632		Single bulged A
homologous
IL_4V88_441
NA
IL_8BQD_0651/2/1290:1292,
1/2/1323:1325		Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_8BQD_0751/2/1636:1638,
1/2/1764:1767		No text annotation
geometric
IL_4V88_463
NA
IL_8BQD_0761/2/1638:1641,
1/2/1760:1764		No text annotation
homologous
IL_4V88_464
NA
IL_8BQD_0771/2/1642:1644,
1/2/1757:1759		Isolated non-canonical cWW pair
homologous
IL_4V88_465
NA
IL_8BQD_0781/2/1644:1647,
1/2/1753:1757		No text annotation
homologous
IL_8CRE_469
IL_73099.1
IL_8BQD_0791/2/1650:1652,
1/2/1748:1750		Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_8BQD_0801/2/1653:1656,
1/2/1744:1747		Double sheared
homologous
IL_4V88_468
NA
IL_8BQD_0811/2/1656:1658,
1/2/1743:1744		Single bulged U
geometric
IL_4V88_469
NA
IL_8BQD_0851/2/1675:1678,
1/2/1723:1726		Tandem non-canonical cWW pairs
geometric
IL_4V88_473
NA
IL_8BQD_0921/BQ/13:15,
1/BS/144:145		Single bulged U
homologous
IL_8C3A_003
NA
IL_8BQD_0931/BQ/27:28,
1/BQ/56:58		No text annotation
homologous
IL_8C3A_004
NA
IL_8BQD_0941/BQ/31:38,
1/BQ/45:53		No text annotation
homologous
IL_8C3A_005
NA
IL_8BQD_0971/BQ/125:127,
1/BQ/141:143		Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_8BQD_0981/BQ/163:167,
1/BQ/255:258		No text annotation
IL_8BQD_1021/BQ/189:191,
1/BQ/204:205		Single bulged U
homologous
IL_8C3A_013
NA
IL_8BQD_1031/BQ/337:339,
1/BS/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_8BQD_1041/BQ/376:379,
1/BQ/390:403		No text annotation
geometric
IL_5TBW_014
NA
IL_8BQD_1051/BQ/404:410,
1/BS/13:19		Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_8BQD_1061/BQ/429:431,
1/BQ/628:630		Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_8BQD_1111/BQ/668:670,
1/BQ/792:794		Isolated non-canonical cWW pair
homologous
IL_8C3A_023
NA
IL_8BQD_1141/BQ/752:753,
1/BQ/779:781		Single bulged A
homologous
IL_5TBW_024
NA
IL_8BQD_1151/BQ/755:756,
1/BQ/775:777		Single bulged U
homologous
IL_8C3A_027
NA
IL_8BQD_1181/BQ/833:834,
1/BQ/859:861		Single bulged G
homologous
IL_8C3A_032
NA
IL_8BQD_1191/BQ/834:838,
1/BQ/855:859		Triple sheared
geometric
IL_5J7L_263
NA
IL_8BQD_1201/BQ/869:872,
1/BQ/888:890		Major groove platform with extra cWW
homologous
IL_5TBW_031
NA
IL_8BQD_1211/BQ/873:875,
1/BQ/886:887		Single bulged U
homologous
IL_8C3A_035
NA
IL_8BQD_1221/BQ/907:909,
1/BQ/919:923		Multiple bulged bases
geometric
IL_5TBW_033
NA
IL_8BQD_1231/BQ/954:956,
1/BQ/965:967		Isolated non-canonical cWW pair
homologous
IL_5TBW_034
NA
IL_8BQD_1241/BQ/969:970,
1/BQ/1111:1113		No text annotation
homologous
IL_8C3A_038
NA
IL_8BQD_1251/BQ/977:982,
1/BQ/1101:1104		No text annotation
IL_8BQD_1261/BQ/983:985,
1/BQ/1099:1100		Single bulged G
homologous
IL_8C3A_040
NA
IL_8BQD_1271/BQ/991:997,
1/BQ/1052:1058		7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5TBW_038
NA
IL_8BQD_1291/BQ/999:1004,
1/BQ/1046:1049		C-loop
homologous
IL_5TBW_040
NA
IL_8BQD_1301/BQ/1006:1009,
1/BQ/1041:1044		Tandem non-canonical cWW pairs
homologous
IL_5TBW_041
NA
IL_8BQD_1351/BQ/1120:1122,
1/BQ/1136:1138		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_8BQD_1361/BQ/1167:1171,
1/BQ/1328:1332		UAA/GAN
homologous
IL_8C3A_051
NA
IL_8BQD_1371/BQ/1173:1180,
1/BQ/1325:1326		SSU/LSU pseudoknot
geometric
IL_5TBW_049
NA
IL_8BQD_1381/BQ/1180:1182,
1/BQ/1324:1325		Single bulged U
homologous
IL_5TBW_050
NA
IL_8BQD_1391/BQ/1187:1194,
1/BQ/1314:1319		No text annotation
homologous
IL_8C3A_054
NA
IL_8BQD_1401/BQ/1194:1205,
1/BQ/1299:1314		No text annotation
geometric
IL_5TBW_052
NA
IL_8BQD_1451/BQ/1376:1378,
1/BQ/1428:1431		No text annotation
homologous
IL_8C3A_061
NA
IL_8BQD_1461/BQ/1385:1387,
1/BQ/1420:1421		Single bulged A
homologous
IL_8C3A_062
NA
IL_8BQD_1471/BQ/1388:1395,
1/BQ/1415:1419		Kink-turn
homologous
IL_8C3A_063
NA
IL_8BQD_1481/BQ/1398:1400,
1/BQ/1411:1412		Single bulged A
homologous
IL_5TBW_060
NA
IL_8BQD_1491/BQ/1444:1450,
1/BQ/2354:2359		No text annotation
homologous
IL_8C3A_065
NA
IL_8BQD_2491/BQ/1501:1505,
1/BQ/1513:1515		C-loop
homologous
IL_8C3A_482
NA
IL_8BQD_1511/BQ/1532:1536,
1/BQ/1585:1590		UAA/GAN
homologous
IL_8C3A_067
NA
IL_8BQD_1521/BQ/1618:1621,
1/BQ/1824:1826		No text annotation
homologous
IL_8C3A_070
NA
IL_8BQD_1531/BQ/1623:1625,
1/BQ/1818:1822		No text annotation
homologous
IL_8C3A_071
NA
IL_8BQD_1561/BQ/1661:1663,
1/BQ/1786:1788		Isolated non-canonical cWW pair
homologous
IL_8C3A_074
NA
IL_8BQD_1571/BQ/1669:1670,
1/BQ/1778:1780		Single bulged C
homologous
IL_8C3A_075
NA
IL_8BQD_1581/BQ/1670:1671,
1/BQ/1776:1778		Single stack bend
homologous
IL_8C3A_076
NA
IL_8BQD_1591/BQ/1694:1698,
1/BQ/1747:1752		No text annotation
homologous
IL_8C3A_077
NA
IL_8BQD_1601/BQ/1702:1707,
1/BQ/1737:1743		No text annotation
homologous
IL_5TBW_072
NA
IL_8BQD_1611/BQ/1711:1717,
1/BQ/1727:1733		Kink-turn
homologous
IL_5TBW_073
NA
IL_8BQD_1621/BQ/1883:1889,
1/BQ/2346:2349		No text annotation
homologous
IL_8C3A_080
NA
IL_8BQD_1631/BQ/1895:1897,
1/BQ/2338:2340		No text annotation
homologous
IL_8C3A_081
NA
IL_8BQD_1641/BQ/1898:1901,
1/BQ/2336:2337		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_8BQD_2501/BQ/1898:1906,
1/BQ/2333:2337		No text annotation
homologous
IL_8C3A_484
NA
IL_8BQD_1651/BQ/1901:1906,
1/BQ/2333:2336		No text annotation
homologous
IL_8C3A_083
NA
IL_8BQD_1661/BQ/1918:1923,
1/BQ/1928:1934		No text annotation
homologous
IL_8C3A_084
NA
IL_8BQD_1671/BQ/1940:1942,
1/BQ/2106:2108		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_8BQD_1681/BQ/1947:1948,
1/BQ/2098:2101		No text annotation
homologous
IL_5TBW_080
NA
IL_8BQD_1761/BQ/2128:2129,
1/BQ/2323:2325		Single bulged A
homologous
IL_8C3A_087
NA
IL_8BQD_1771/BQ/2156:2161,
1/BQ/2173:2180		Kink-turn related
homologous
IL_5TBW_083
NA
IL_8BQD_1781/BQ/2196:2199,
1/BQ/2245:2246		No text annotation
homologous
IL_8C3A_089
NA
IL_8BQD_1791/BQ/2200:2201,
1/BQ/2241:2244		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_8BQD_1801/BQ/2204:2206,
1/BQ/2237:2238		Single stack bend
homologous
IL_8C3A_091
NA
IL_8BQD_2541/BQ/2204:2210,
1/BQ/2235:2238		No text annotation
IL_8BQD_1811/BQ/2206:2210,
1/BQ/2235:2237		No text annotation
IL_8BQD_1831/BQ/2276:2277,
1/BQ/2307:2310		No text annotation
homologous
IL_8C3A_094
NA
IL_8BQD_1841/BQ/2277:2288,
1/BQ/2304:2307		No text annotation
geometric
IL_5TBW_090
NA
IL_8BQD_1851/BQ/2391:2394,
1/BQ/2986:2988		Major groove platform with extra pair
homologous
IL_5TBW_091
NA
IL_8BQD_1861/BQ/2396:2398,
1/BQ/2981:2984		No text annotation
homologous
IL_8C3A_097
NA
IL_8BQD_1871/BQ/2409:2411,
1/BQ/2811:2812		Single bulged U
homologous
IL_8C3A_098
NA
IL_8BQD_1881/BQ/2412:2413,
1/BQ/2807:2810		Minor groove platform
homologous
IL_5TBW_094
NA
IL_8BQD_1891/BQ/2423:2425,
1/BQ/2604:2607		No text annotation
homologous
IL_8C3A_100
NA
IL_8BQD_1921/BQ/2520:2526,
1/BQ/2584:2587		No text annotation
homologous
IL_8C3A_106
NA
IL_8BQD_1931/BQ/2614:2615,
1/BQ/2625:2627		Single bulged A
homologous
IL_5TBW_098
NA
IL_8BQD_1941/BQ/2666:2668,
1/BQ/2686:2690		Isolated tHS basepair with bulges
geometric
IL_5TBW_099
NA
IL_8BQD_1951/BQ/2718:2721,
1/BQ/2735:2738		Tandem non-canonical cWW pairs
homologous
IL_8C3A_109
NA
IL_8BQD_2571/BQ/2771:2774,
1/BQ/2786:2787		Single stack bend
geometric
IL_4LFB_041
IL_15011.2
IL_8BQD_1971/BQ/2823:2824,
1/BQ/2865:2867		Major groove platform
homologous
IL_5TBW_102
NA
IL_8BQD_1981/BQ/2824:2826,
1/BQ/2863:2865		Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_8BQD_1991/BQ/2826:2828,
1/BQ/2862:2863		Major groove platform
homologous
IL_5TBW_104
NA
IL_8BQD_2001/BQ/2828:2830,
1/BQ/2858:2862		Major groove minor groove platform with extra cWW
geometric
IL_5TBW_105
NA
IL_8BQD_2021/BQ/2876:2877,
1/BQ/2949:2951		Major groove platform
homologous
IL_8C3A_115
NA
IL_8BQD_2031/BQ/2879:2881,
1/BQ/2943:2947		Isolated non-canonical cWW with bulges
geometric
IL_5TBW_108
NA
IL_8BQD_2041/BQ/2881:2882,
1/BQ/2940:2943		No text annotation
homologous
IL_8C3A_117
NA
IL_8BQD_2051/BQ/2889:2891,
1/BQ/2912:2914		Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_8BQD_2581/BQ/2889:2892,
1/BQ/2909:2914		No text annotation
homologous
IL_8P9A_338
IL_07469.3
IL_8BQD_2061/BQ/2891:2892,
1/BQ/2909:2912		Major groove platform with intercalation
geometric
IL_5TBW_111
NA
IL_8BQD_2071/BQ/2918:2920,
1/BQ/2926:2928		Isolated non-canonical cWW pair
geometric
IL_5TBW_112
NA
IL_8BQD_2081/BQ/2960:2961,
1/BQ/2970:2972		Single bulged A
geometric
IL_7RQB_101
NA
IL_8BQD_2091/BQ/3004:3007,
1/BQ/3139:3144		Double sheared
homologous
IL_8C3A_123
NA
IL_8BQD_2101/BQ/3012:3014,
1/BQ/3040:3042		Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_8BQD_2111/BQ/3018:3025,
1/BQ/3030:3036		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_8BQD_2121/BQ/3047:3051,
1/BQ/3091:3094		Major groove minor groove platform with tHH
homologous
IL_8C3A_126
NA
IL_8BQD_2131/BQ/3054:3059,
1/BQ/3084:3088		UAA/GAN related
homologous
IL_8C3A_127
NA
IL_8BQD_2141/BQ/3063:3064,
1/BQ/3077:3080		No text annotation
homologous
IL_8C3A_128
NA
IL_8BQD_2151/BQ/3103:3107,
1/BQ/3127:3131		UAA/GAN
homologous
IL_8C3A_129
NA
IL_8BQD_2181/BQ/3168:3170,
1/BQ/3280:3282		Isolated non-canonical cWW pair
homologous
IL_5TBW_122
NA
IL_8BQD_2251/BQ/3300:3303,
1/BQ/3311:3314		Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_8BQD_2281/BQ/3328:3330,
1/BQ/3373:3378		No text annotation
homologous
IL_8C3A_138
NA
IL_8BQD_2291/BQ/3332:3337,
1/BQ/3367:3371		No text annotation
homologous
IL_8C3A_139
NA
IL_8BQD_2301/BQ/3340:3342,
1/BQ/3363:3364		Single bulged U
geometric
IL_3WBM_001
IL_97561.2
IL_8BQD_2311/BQ/3342:3345,
1/BQ/3360:3363		Double sheared; A in syn
homologous
IL_8C3A_141
NA
IL_8BQD_2601/BR/21:28,
1/BR/52:58		No text annotation
IL_8BQD_2351/BR/27:28,
1/BR/52:54		Single stack bend
geometric
IL_4V9F_005
IL_15011.2
IL_8BQD_2361/BR/28:29,
1/BR/49:52		Minor groove platform
geometric
IL_5TBW_374
NA
IL_8BQD_2381/BR/32:36,
1/BR/41:45		Symmetric double minor groove platform
homologous
IL_5TBW_376
NA
IL_8BQD_2401/BR/84:87,
1/BR/94:96		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA

Problematic loops

#loop idProblemSequence
IL_8BQD_002Isolated non-canonical cWW pair
IL_8BQD_006No text annotation
IL_8BQD_007No text annotation
IL_8BQD_009Multiple bulged bases
IL_8BQD_010No text annotation
IL_8BQD_011tWH-tWH-tHW-tHW
IL_8BQD_012No text annotation
IL_8BQD_013Double sheared
IL_8BQD_014Major groove platform with extra cWW
IL_8BQD_015Isolated non-canonical cWW pair
IL_8BQD_016Single bulged A
IL_8BQD_017No text annotation
IL_8BQD_018Single bulged U
IL_8BQD_021No text annotation
IL_8BQD_024Single bulged U
IL_8BQD_025C-loop
IL_8BQD_026Single bulged G
IL_8BQD_027Single bulged A
IL_8BQD_028No text annotation
IL_8BQD_029Double sheared
IL_8BQD_030Multiple bulged bases
IL_8BQD_031Single bulged U
IL_8BQD_034Isolated non-canonical cWW pair
IL_8BQD_036Isolated non-canonical cWW pair
IL_8BQD_243Single stack bend
IL_8BQD_037Major groove minor groove platform; mini C-loop
IL_8BQD_038Isolated non-canonical cWW pair
IL_8BQD_244Isolated non-canonical cWW pair
IL_8BQD_040Major groove platform; stack outside cWW
IL_8BQD_041Isolated non-canonical cWW pair
IL_8BQD_261Single bulged U
IL_8BQD_245Isolated non-canonical cWW pair
IL_8BQD_042Tandem non-canonical cWW pairs
IL_8BQD_044Tandem non-canonical cWW pairs
IL_8BQD_045Kink-turn related
IL_8BQD_046Other IL
IL_8BQD_047tSH-tHW-tHS
IL_8BQD_048No text annotation
IL_8BQD_050No text annotation
IL_8BQD_053Single bulged G
IL_8BQD_054C-loop
IL_8BQD_055Isolated non-canonical cWW pair
IL_8BQD_056Minor groove platform
IL_8BQD_057Isolated non-canonical cWW pair
IL_8BQD_058No text annotation
IL_8BQD_246No text annotation
IL_8BQD_059No text annotation
IL_8BQD_060No text annotation
IL_8BQD_061Single bulged U
IL_8BQD_062Tandem non-canonical cWW pairs
IL_8BQD_247Isolated cWS basepair
IL_8BQD_248No text annotation
IL_8BQD_063Minor groove platform with extra cWW
IL_8BQD_064Single bulged A
IL_8BQD_066Minor groove platform
IL_8BQD_067Isolated non-canonical cWW pair
IL_8BQD_068Minor groove platform
IL_8BQD_069No text annotation
IL_8BQD_070No text annotation
IL_8BQD_071No text annotation
IL_8BQD_072180 degree turn
IL_8BQD_073Tandem non-canonical cWW pairs
IL_8BQD_074No text annotation
IL_8BQD_082Isolated non-canonical cWW pair
IL_8BQD_083Double sheared
IL_8BQD_084Isolated non-canonical cWW pair
IL_8BQD_086Triple sheared
IL_8BQD_087Isolated non-canonical cWW pair
IL_8BQD_088No text annotation
IL_8BQD_089Single stack bend
IL_8BQD_090No text annotation
IL_8BQD_091Single bulged C
IL_8BQD_095No text annotation
IL_8BQD_096No text annotation
IL_8BQD_099No text annotation
IL_8BQD_100Isolated non-canonical cWW pair
IL_8BQD_101No text annotation
IL_8BQD_107No text annotation
IL_8BQD_108Single bulged A
IL_8BQD_109No text annotation
IL_8BQD_110No text annotation
IL_8BQD_112No text annotation
IL_8BQD_113No text annotation
IL_8BQD_116No text annotation
IL_8BQD_117No text annotation
IL_8BQD_128Minor groove platform
IL_8BQD_131Isolated non-canonical cWW pair
IL_8BQD_132Isolated non-canonical cWW with bulges
IL_8BQD_133Isolated non-canonical cWW pair
IL_8BQD_134Single bulged A
IL_8BQD_141Single bulged U
IL_8BQD_142Kink-turn
IL_8BQD_143No text annotation
IL_8BQD_144Major groove platform with extra cWW
IL_8BQD_150No text annotation
IL_8BQD_154No text annotation
IL_8BQD_155Triple sheared
IL_8BQD_169Single stack bend
IL_8BQD_262No text annotation
IL_8BQD_251No text annotation
IL_8BQD_170No text annotation
IL_8BQD_171No text annotation
IL_8BQD_172No text annotation
IL_8BQD_252No text annotation
IL_8BQD_173No text annotation
IL_8BQD_174Isolated non-canonical cWW pair
IL_8BQD_175No text annotation
IL_8BQD_253No text annotation
IL_8BQD_182No text annotation
IL_8BQD_190Single stack bend
IL_8BQD_255No text annotation
IL_8BQD_191No text annotation
IL_8BQD_256Partly complementary
IL_8BQD_196Other IL
IL_8BQD_201No text annotation
IL_8BQD_216Single stack bend
IL_8BQD_259No text annotation
IL_8BQD_217Isolated non-canonical cWW pair
IL_8BQD_219Single bulged A
IL_8BQD_220No text annotation
IL_8BQD_221Single bulged U
IL_8BQD_222No text annotation
IL_8BQD_223Isolated non-canonical cWW pair
IL_8BQD_224Tandem non-canonical cWW pairs
IL_8BQD_226Single bulged U
IL_8BQD_227Single bulged U
IL_8BQD_232Multiple bulged bases
IL_8BQD_233Single bulged A
IL_8BQD_234No text annotation
IL_8BQD_237Single stack bend
IL_8BQD_2398x7 Sarcin-Ricin; G-bulge
IL_8BQD_241Isolated non-canonical cWW pair
IL_8BQD_242Single bulged U

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8BQD_0011/2/41:42,
1/2/433:439,
1/2/464:466		No text annotation
geometric
J3_8C3A_082
NA
J3_8BQD_0321/2/41:48,
1/2/431:439,
1/2/464:466		No text annotation
homologous
J3_8P9A_069
J3_63856.1
J3_8BQD_0111/2/1293:1294,
1/2/1303:1306,
1/2/1318:1322		No text annotation
homologous
J3_8C3A_085
NA
J3_8BQD_0141/BQ/113:123,
1/BQ/149:158,
1/BQ/263:267		No text annotation
homologous
J3_8C3A_001
NA
J3_8BQD_0361/BQ/113:124,
1/BQ/144:158,
1/BQ/263:267		No text annotation
J3_8BQD_0371/BQ/185:189,
1/BQ/205:214,
1/BQ/226:231		No text annotation
homologous
J3_8P9A_044
J3_97456.1
J3_8BQD_0381/BQ/340:356,
1/BQ/363:368,
1/BS/21:24		No text annotation
homologous
J3_8P9A_045
J3_07616.1
J3_8BQD_0151/BQ/369:376,
1/BQ/403:404,
1/BS/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_8BQD_0391/BQ/369:379,
1/BQ/390:404,
1/BS/19:20		No text annotation
homologous
J3_8C3A_049
NA
J3_8BQD_0171/BQ/814:820,
1/BQ/905:907,
1/BQ/923:926		No text annotation
homologous
J3_8C3A_003
NA
J3_8BQD_0181/BQ/828:831,
1/BQ/863:867,
1/BQ/892:897		No text annotation
homologous
J3_5TBW_005
NA
J3_8BQD_0191/BQ/986:987,
1/BQ/1062:1066,
1/BQ/1092:1098		No text annotation
homologous
J3_5TBW_006
NA
J3_8BQD_0211/BQ/1479:1485,
1/BQ/1857:1859,
1/BQ/1871:1874		No text annotation
homologous
J3_8C3A_006
NA
J3_8BQD_0221/BQ/1488:1491,
1/BQ/1837:1843,
1/BQ/1852:1854		No text annotation
homologous
J3_8C3A_007
NA
J3_8BQD_0231/BQ/1526:1531,
1/BQ/1591:1595,
1/BQ/1612:1613		No text annotation
homologous
J3_5TBW_010
NA
J3_8BQD_0401/BQ/1537:1542,
1/BQ/1551:1560,
1/BQ/1579:1584		No text annotation
J3_8BQD_0411/BQ/1654:1658,
1/BQ/1791:1792,
1/BQ/1796:1801		No text annotation
homologous
J3_8P9A_058
J3_08594.1
J3_8BQD_0251/BQ/2432:2435,
1/BQ/2512:2517,
1/BQ/2590:2597		No text annotation
homologous
J3_8C3A_008
NA
J3_8BQD_0261/BQ/2529:2532,
1/BQ/2547:2563,
1/BQ/2578:2581		No text annotation
homologous
J3_8P9A_060
J3_76247.1
J3_8BQD_0421/BQ/2651:2653,
1/BQ/2754:2765,
1/BQ/2793:2798		No text annotation
homologous
J3_8C3A_056
NA
J3_8BQD_0271/BQ/2664:2666,
1/BQ/2690:2692,
1/BQ/2701:2706		No text annotation
homologous
J3_8C3A_010
NA
J3_8BQD_0281/BQ/2886:2889,
1/BQ/2914:2916,
1/BQ/2930:2936		No text annotation
homologous
J3_5TBW_014
NA
J3_8BQD_0431/BQ/3171:3176,
1/BQ/3212:3220,
1/BQ/3265:3279		No text annotation
homologous
J3_8P9A_064
J3_03190.1
J3_8BQD_0291/BQ/3298:3300,
1/BQ/3314:3318,
1/BQ/3388:3390		No text annotation
homologous
J3_5TBW_015
NA
J3_8BQD_0311/BS/44:45,
1/BS/58:64,
1/BS/96:100		No text annotation
homologous
J3_8P9A_067
J3_01004.1
J4_8BQD_0021/2/622:624,
1/2/975:980,
1/2/1021:1032,
1/2/1103:1104		No text annotation
homologous
J4_8C3A_022
NA
J4_8BQD_0031/BQ/112:113,
1/BQ/267:272,
1/BQ/293:299,
1/BQ/316:319		No text annotation
homologous
J4_8P9A_012
J4_94698.1
J4_8BQD_0041/BQ/185:189,
1/BQ/205:208,
1/BQ/212:214,
1/BQ/226:231		No text annotation
homologous
J4_8P9A_013
J4_43318.1
J4_8BQD_0051/BQ/1451:1457,
1/BQ/1475:1476,
1/BQ/1877:1880,
1/BQ/2352:2353		No text annotation
homologous
J4_8C3A_003
NA
J4_8BQD_0061/BQ/1492:1496,
1/BQ/1520:1525,
1/BQ/1614:1615,
1/BQ/1829:1836		No text annotation
homologous
J4_8P9A_015
J4_47264.1
J4_8BQD_0071/BQ/1674:1675,
1/BQ/1693:1694,
1/BQ/1752:1753,
1/BQ/1772:1773		No text annotation
homologous
J4_8P9A_016
J4_75575.1
J4_8BQD_0081/BQ/2130:2134,
1/BQ/2146:2150,
1/BQ/2186:2190,
1/BQ/2317:2322		No text annotation
homologous
J4_8P9A_017
J4_78485.1
J4_8BQD_0091/BQ/2192:2194,
1/BQ/2248:2249,
1/BQ/2267:2276,
1/BQ/2310:2315		No text annotation
homologous
J4_8C3A_007
NA
J4_8BQD_0101/BQ/2654:2658,
1/BQ/2712:2716,
1/BQ/2740:2742,
1/BQ/2751:2753		No text annotation
homologous
J4_8P9A_019
J4_59590.1
J4_8BQD_0111/BQ/3010:3012,
1/BQ/3042:3043,
1/BQ/3098:3100,
1/BQ/3134:3136		No text annotation
homologous
J4_8P9A_020
J4_37757.1
J5_8BQD_0051/2/636:642,
1/2/692:699,
1/2/739:744,
1/2/807:822,
1/2/850:860		No text annotation
J5_8BQD_0061/BQ/20:22,
1/BS/35:42,
1/BS/102:107,
1/BS/115:116,
1/BS/137:139		No text annotation
homologous
J5_8C3A_001
NA
J5_8BQD_0071/BQ/658:663,
1/BQ/799:802,
1/BQ/941:944,
1/BQ/1375:1376,
1/BQ/1431:1437		No text annotation
homologous
J5_8C3A_002
NA
J5_8BQD_0081/BQ/675:678,
1/BQ/702:706,
1/BQ/713:721,
1/BQ/749:751,
1/BQ/782:787		No text annotation
homologous
J5_8P9A_012
J5_56629.1
J5_8BQD_0091/BQ/1906:1914,
1/BQ/1938:1939,
1/BQ/2109:2110,
1/BQ/2114:2122,
1/BQ/2331:2333		No text annotation
homologous
J5_8C3A_004
NA
J5_8BQD_0101/BQ/2399:2406,
1/BQ/2815:2823,
1/BQ/2867:2876,
1/BQ/2951:2957,
1/BQ/2975:2980		No text annotation
J5_8BQD_0111/BQ/2416:2419,
1/BQ/2611:2614,
1/BQ/2627:2628,
1/BQ/2650:2651,
1/BQ/2798:2804		No text annotation
homologous
J5_8P9A_015
J5_96125.1
J6_8BQD_0011/BQ/22:27,
1/BQ/58:68,
1/BQ/75:79,
1/BQ/106:110,
1/BQ/321:331,
1/BS/32:35		No text annotation
J6_8BQD_0021/BQ/2416:2419,
1/BQ/2611:2614,
1/BQ/2627:2628,
1/BQ/2650:2653,
1/BQ/2754:2765,
1/BQ/2793:2804		No text annotation
J7_8BQD_0011/BQ/949:954,
1/BQ/967:968,
1/BQ/1114:1117,
1/BQ/1141:1146,
1/BQ/1157:1161,
1/BQ/1338:1339,
1/BQ/1365:1370		No text annotation

Problematic loops

#loop idProblemSequence
J3_8BQD_033No text annotation
J3_8BQD_002No text annotation
J3_8BQD_034No text annotation
J3_8BQD_003No text annotation
J3_8BQD_004No text annotation
J3_8BQD_005No text annotation
J3_8BQD_006No text annotation
J3_8BQD_007No text annotation
J3_8BQD_008No text annotation
J3_8BQD_009No text annotation
J3_8BQD_010No text annotation
J3_8BQD_012No text annotation
J3_8BQD_035No text annotation
J3_8BQD_013No text annotation
J3_8BQD_016No text annotation
J3_8BQD_020No text annotation
J3_8BQD_024No text annotation
J3_8BQD_030No text annotation
J4_8BQD_001No text annotation
J5_8BQD_001No text annotation
J5_8BQD_002No text annotation
J5_8BQD_012No text annotation
J5_8BQD_003No text annotation
J5_8BQD_013No text annotation
J5_8BQD_004No text annotation

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