HL_8BQD_017

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCUAACCUUGAGCUUGGCGAAC

Length

22 nucleotides

Bulged bases

8BQD|1|2|C|709, 8BQD|1|2|G|714, 8BQD|1|2|C|726, 8BQD|1|2|G|730, 8BQD|1|2|G|732, 8BQD|1|2|A|733

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_017 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3689

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

8BQD|1|2|G|703
8BQD|1|2|C|704
8BQD|1|2|U|705
8BQD|1|2|A|706
8BQD|1|2|A|707
8BQD|1|2|C|708
8BQD|1|2|C|709
8BQD|1|2|U|710
8BQD|1|2|U|711
8BQD|1|2|G|712
8BQD|1|2|A|713
8BQD|1|2|G|714
8BQD|1|2|C|726
8BQD|1|2|U|727
8BQD|1|2|U|728
8BQD|1|2|G|729
8BQD|1|2|G|730
8BQD|1|2|C|731
8BQD|1|2|G|732
8BQD|1|2|A|733
8BQD|1|2|A|734
8BQD|1|2|C|735

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A