HL_8BQD_024

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_024 not in the Motif Atlas

Homologous match to HL_8P9A_212

Geometric discrepancy: 0.3585

The information below is about HL_8P9A_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97917.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8BQD|1|2|U|1055
8BQD|1|2|U|1056
8BQD|1|2|U|1057
8BQD|1|2|U|1058
8BQD|1|2|U|1059
8BQD|1|2|U|1060
8BQD|1|2|A|1061
8BQD|1|2|A|1062
8BQD|1|2|U|1063
8BQD|1|2|G|1064

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

40S ribosomal protein S1-A

Chain f

40S ribosomal protein S27-A