HL_8BQD_026

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_026 not in the Motif Atlas

Homologous match to HL_4V88_211

Geometric discrepancy: 0.1076

The information below is about HL_4V88_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BQD|1|2|C|1121
8BQD|1|2|G|1122
8BQD|1|2|C|1123
8BQD|1|2|A|1124
8BQD|1|2|A|1125
8BQD|1|2|G|1126

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AS

60S ribosomal protein L41

Chain AT

60S ribosomal protein L43-A

Chain BQ

Large subunit ribosomal RNA; LSU rRNA