HL_8BQD_042

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

8BQD|1|BQ|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_042 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.1483

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8BQD|1|BQ|U|194
8BQD|1|BQ|U|195
8BQD|1|BQ|G|196
8BQD|1|BQ|G|197
8BQD|1|BQ|A|198
8BQD|1|BQ|A|199
8BQD|1|BQ|C|200
8BQD|1|BQ|A|201

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AK

60S ribosomal protein L26-A

Chain BE

RPL4A isoform 1

Chain BG

RPL32 isoform 1