HL_8BQD_046
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGUAAAUUCC
- Length
- 10 nucleotides
- Bulged bases
- 8BQD|1|BQ|G|304, 8BQD|1|BQ|U|305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BQD_046 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.0818
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8BQD|1|BQ|G|303
8BQD|1|BQ|G|304
8BQD|1|BQ|U|305
8BQD|1|BQ|A|306
8BQD|1|BQ|A|307
8BQD|1|BQ|A|308
8BQD|1|BQ|U|309
8BQD|1|BQ|U|310
8BQD|1|BQ|C|311
8BQD|1|BQ|C|312
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AC
- 60S ribosomal protein L36-A
- Chain AP
- 60S ribosomal protein L42-A
- Chain AQ
- 60S ribosomal protein L15-A
- Chain AR
- 60S ribosomal protein L28
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