HL_8BQD_050

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_050 not in the Motif Atlas

Homologous match to HL_5TBW_013

Geometric discrepancy: 0.4028

The information below is about HL_5TBW_013

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BQD|1|BQ|C|599
8BQD|1|BQ|G|600
8BQD|1|BQ|U|601
8BQD|1|BQ|A|602
8BQD|1|BQ|A|603
8BQD|1|BQ|G|604

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BE

RPL4A isoform 1

Chain BO

60S ribosomal protein L7-A