HL_8BQD_060
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAAAUG
- Length
- 7 nucleotides
- Bulged bases
- 8BQD|1|BQ|U|1028
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BQD_060 not in the Motif Atlas
- Homologous match to HL_5TBW_023
- Geometric discrepancy: 0.2486
- The information below is about HL_5TBW_023
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
8BQD|1|BQ|C|1023
8BQD|1|BQ|G|1024
8BQD|1|BQ|A|1025
8BQD|1|BQ|A|1026
8BQD|1|BQ|A|1027
8BQD|1|BQ|U|1028
8BQD|1|BQ|G|1029
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AG
- RPL11B isoform 1
- Chain E
- 40S ribosomal protein S15
- Chain H
- 40S ribosomal protein S18-A
Coloring options: