3D structure

PDB id
8BQD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CGAAAUG
Length
7 nucleotides
Bulged bases
8BQD|1|BQ|U|1028
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BQD_060 not in the Motif Atlas
Homologous match to HL_5TBW_023
Geometric discrepancy: 0.2486
The information below is about HL_5TBW_023
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

8BQD|1|BQ|C|1023
8BQD|1|BQ|G|1024
8BQD|1|BQ|A|1025
8BQD|1|BQ|A|1026
8BQD|1|BQ|A|1027
8BQD|1|BQ|U|1028
8BQD|1|BQ|G|1029

Current chains

Chain BQ
25S rRNA

Nearby chains

Chain AG
RPL11B isoform 1
Chain E
40S ribosomal protein S15
Chain H
40S ribosomal protein S18-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.2329 s
Application loaded.