HL_8BQD_065

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGUAACAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_065 not in the Motif Atlas

Homologous match to HL_5TBW_028

Geometric discrepancy: 0.3691

The information below is about HL_5TBW_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8BQD|1|BQ|G|1266
8BQD|1|BQ|U|1267
8BQD|1|BQ|G|1268
8BQD|1|BQ|U|1269
8BQD|1|BQ|A|1270
8BQD|1|BQ|A|1271
8BQD|1|BQ|C|1272
8BQD|1|BQ|A|1273
8BQD|1|BQ|A|1274
8BQD|1|BQ|C|1275

Current chains

Chain BQ

25S rRNA

Nearby chains