HL_8BQD_068

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_068 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1253

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8BQD|1|BQ|A|1462
8BQD|1|BQ|U|1463
8BQD|1|BQ|G|1464
8BQD|1|BQ|A|1465
8BQD|1|BQ|G|1466
8BQD|1|BQ|A|1467
8BQD|1|BQ|A|1468
8BQD|1|BQ|C|1469
8BQD|1|BQ|U|1470

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AX

60S ribosomal protein L17-A

Chain BC

60S ribosomal protein L31-A

Chain BF

60S ribosomal protein L19-A