HL_8BQD_072

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

8BQD|1|BQ|U|1606, 8BQD|1|BQ|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_072 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.09

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8BQD|1|BQ|G|1599
8BQD|1|BQ|U|1600
8BQD|1|BQ|U|1601
8BQD|1|BQ|A|1602
8BQD|1|BQ|A|1603
8BQD|1|BQ|G|1604
8BQD|1|BQ|A|1605
8BQD|1|BQ|U|1606
8BQD|1|BQ|U|1607
8BQD|1|BQ|C|1608

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L25

Chain BF

60S ribosomal protein L19-A

Chain BN

60S ribosomal protein L34-A