HL_8BQD_081

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCUUGC

Length

6 nucleotides

Bulged bases

8BQD|1|BQ|U|2010

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_081 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2274

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8BQD|1|BQ|G|2008
8BQD|1|BQ|C|2009
8BQD|1|BQ|U|2010
8BQD|1|BQ|U|2011
8BQD|1|BQ|G|2012
8BQD|1|BQ|C|2013

Current chains

Chain BQ

25S rRNA

Nearby chains