HL_8BQD_084

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

8BQD|1|BQ|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_084 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.1004

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BQD|1|BQ|A|2164
8BQD|1|BQ|G|2165
8BQD|1|BQ|A|2166
8BQD|1|BQ|A|2167
8BQD|1|BQ|A|2168
8BQD|1|BQ|G|2169
8BQD|1|BQ|U|2170

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L8-A

Chain AQ

60S ribosomal protein L15-A

Chain AW

60S ribosomal protein L2-A