HL_8BQD_103

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_103 not in the Motif Atlas

Homologous match to HL_8C3A_066

Geometric discrepancy: 0.1215

The information below is about HL_8C3A_066

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BQD|1|BQ|C|3025
8BQD|1|BQ|G|3026
8BQD|1|BQ|A|3027
8BQD|1|BQ|G|3028
8BQD|1|BQ|A|3029
8BQD|1|BQ|G|3030

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AD

RPL9A isoform 1