HL_8BQX_002

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAUUUAUACAG

Length

12 nucleotides

Bulged bases

8BQX|1|2|U|74, 8BQX|1|2|U|77

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQX_002 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.133

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8BQX|1|2|C|70
8BQX|1|2|A|71
8BQX|1|2|A|72
8BQX|1|2|U|73
8BQX|1|2|U|74
8BQX|1|2|U|75
8BQX|1|2|A|76
8BQX|1|2|U|77
8BQX|1|2|A|78
8BQX|1|2|C|79
8BQX|1|2|A|80
8BQX|1|2|G|81

Current chains

Chain 2

18S rRNA

Nearby chains

Chain T

40S ribosomal protein S6-A