RNA 3D Hub //

8BQX Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8BQX_0011/2/7:17No text annotation
homologous
HL_4V88_186
NA
HL_8BQX_0101/2/393:404No text annotation
homologous
HL_4V88_195
NA
HL_8BQX_0111/2/414:419UNCG
homologous
HL_4V88_196
NA
HL_8BQX_0151/2/569:574GNRA variation
homologous
HL_4V88_200
NA
HL_8BQX_0221/2/937:942GNRA
homologous
HL_4V88_207
NA
HL_8BQX_0231/2/997:1007No text annotation
homologous
HL_4V88_208
NA
HL_8BQX_0261/2/1121:1126GNRA
homologous
HL_4V88_211
NA
HL_8BQX_0381/BQ/38:45No text annotation
homologous
HL_8C3A_001
NA
HL_8BQX_0391/BQ/69:74No text annotation
homologous
HL_8C3A_002
NA
HL_8BQX_0401/BQ/90:96No text annotation
homologous
HL_8C3A_003
NA
HL_8BQX_0411/BQ/132:136No text annotation
homologous
HL_8C3A_004
NA
HL_8BQX_0421/BQ/194:201T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_8BQX_0441/BQ/216:224T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_8BQX_0451/BQ/278:287No text annotation
homologous
HL_8C3A_008
NA
HL_8BQX_0461/BQ/303:312Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_8BQX_0471/BQ/357:362GNRA
homologous
HL_8C3A_010
NA
HL_8BQX_0481/BQ/382:387GNRA
homologous
HL_5TBW_011
NA
HL_8BQX_0511/BQ/640:649T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_8BQX_0521/BQ/686:694No text annotation
homologous
HL_5TBW_015
NA
HL_8BQX_0531/BQ/707:712GNRA
homologous
HL_8C3A_016
NA
HL_8BQX_0561/BQ/844:849GNRA
homologous
HL_5TBW_019
NA
HL_8BQX_0571/BQ/876:885No text annotation
homologous
HL_5TBW_020
NA
HL_8BQX_0581/BQ/910:918No text annotation
homologous
HL_5TBW_021
NA
HL_8BQX_0591/BQ/958:963Externally structured
homologous
HL_8C3A_022
NA
HL_8BQX_0621/BQ/1126:1132GNRA
homologous
HL_8C3A_025
NA
HL_8BQX_0631/BQ/1148:1155No text annotation
homologous
HL_8C3A_026
NA
HL_8BQX_0671/BQ/1403:1408GNRA
homologous
HL_8C3A_030
NA
HL_8BQX_0681/BQ/1462:1470T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_8BQX_0691/BQ/1506:1512Pseudoknot geometry with 3' bulge
homologous
HL_8C3A_032
NA
HL_8BQX_0701/BQ/1544:1549GNRA variation
homologous
HL_8C3A_033
NA
HL_8BQX_0721/BQ/1599:1608No text annotation
homologous
HL_5TBW_035
NA
HL_8BQX_0741/BQ/1680:1688No text annotation
homologous
HL_5TBW_037
NA
HL_8BQX_0751/BQ/1719:1725No text annotation
homologous
HL_5TBW_038
NA
HL_8BQX_0771/BQ/1792:1796Mini UNCG
homologous
HL_5TBW_040
NA
HL_8BQX_0781/BQ/1844:1851No text annotation
homologous
HL_8C3A_041
NA
HL_8BQX_0791/BQ/1862:1868GNRA
homologous
HL_5TBW_042
NA
HL_8BQX_0801/BQ/1923:1928UNCG
geometric
HL_5Y85_004
HL_34617.5
HL_8BQX_0821/BQ/2110:2114No text annotation
homologous
HL_8C3A_045
NA
HL_8BQX_0831/BQ/2135:2145No text annotation
homologous
HL_8C3A_046
NA
HL_8BQX_0841/BQ/2164:2170GNRA
homologous
HL_8C3A_047
NA
HL_8BQX_0851/BQ/2220:2225GNRA
homologous
HL_5TBW_048
NA
HL_8BQX_0861/BQ/2253:2263No text annotation
homologous
HL_8C3A_049
NA
HL_8BQX_0871/BQ/2292:2300No text annotation
homologous
HL_5TBW_050
NA
HL_8BQX_0881/BQ/2369:2378No text annotation
homologous
HL_5TBW_051
NA
HL_8BQX_0921/BQ/2616:2624No text annotation
homologous
HL_5TBW_054
NA
HL_8BQX_0931/BQ/2633:2645No text annotation
homologous
HL_8C3A_056
NA
HL_8BQX_0951/BQ/2693:2700Pseudoknot geometry
homologous
HL_5TBW_057
NA
HL_8BQX_0961/BQ/2724:2732No text annotation
homologous
HL_8C3A_059
NA
HL_8BQX_0981/BQ/2776:2784Pseudoknot geometry
homologous
HL_8C3A_061
NA
HL_8BQX_1001/BQ/2897:2904No text annotation
homologous
HL_8C3A_063
NA
HL_8BQX_1011/BQ/2920:2926No text annotation
homologous
HL_5TBW_063
NA
HL_8BQX_1021/BQ/2963:2968GNRA
homologous
HL_5TBW_064
NA
HL_8BQX_1041/BQ/3068:3073Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_8BQX_1051/BQ/3110:3124No text annotation
homologous
HL_8C3A_068
NA
HL_8BQX_1081/BQ/3303:3311No text annotation
homologous
HL_8C3A_071
NA
HL_8BQX_1111/BR/88:93GNRA
homologous
HL_5TBW_186
NA
HL_8BQX_1121/BS/47:56Pseudoknot with intercalation
geometric
HL_7A0S_001
HL_93438.2
HL_8BQX_1131/BS/69:89No text annotation
homologous
HL_8P4V_073
NA
HL_8BQX_1141/BS/108:114No text annotation
homologous
HL_5TBW_075
NA
HL_8BQX_1151/BS/124:129No text annotation
homologous
HL_5TBW_076
NA

Problematic loops

#loop idProblemSequence
HL_8BQX_002No text annotation
HL_8BQX_003GNRA related
HL_8BQX_004No text annotation
HL_8BQX_005No text annotation
HL_8BQX_006T-loop with 1 bulged base
HL_8BQX_007Mini UNCG
HL_8BQX_008GNRA related
HL_8BQX_009No text annotation
HL_8BQX_012No text annotation
HL_8BQX_013No text annotation
HL_8BQX_116No text annotation
HL_8BQX_014No text annotation
HL_8BQX_016No text annotation
HL_8BQX_017No text annotation
HL_8BQX_018No text annotation
HL_8BQX_019No text annotation
HL_8BQX_020Pseudoknot geometry
HL_8BQX_021No text annotation
HL_8BQX_024No text annotation
HL_8BQX_025GNRA
HL_8BQX_027No text annotation
HL_8BQX_028Anticodon loop related
HL_8BQX_029GNRA
HL_8BQX_030No text annotation
HL_8BQX_031No text annotation
HL_8BQX_032GNRA
HL_8BQX_033GNRA
HL_8BQX_034No text annotation
HL_8BQX_035No text annotation
HL_8BQX_036No text annotation
HL_8BQX_037GNRA variation
HL_8BQX_043No text annotation
HL_8BQX_049No text annotation
HL_8BQX_050GNRA
HL_8BQX_054GNRA
HL_8BQX_055No text annotation
HL_8BQX_060GNRA
HL_8BQX_061No text annotation
HL_8BQX_064No text annotation
HL_8BQX_065No text annotation
HL_8BQX_066No text annotation
HL_8BQX_071No text annotation
HL_8BQX_073GNRA
HL_8BQX_076No text annotation
HL_8BQX_081No text annotation
HL_8BQX_089No text annotation
HL_8BQX_090No text annotation
HL_8BQX_091Externally structured
HL_8BQX_094No text annotation
HL_8BQX_097GNRA
HL_8BQX_099No text annotation
HL_8BQX_103GNRA
HL_8BQX_106No text annotation
HL_8BQX_107No text annotation
HL_8BQX_109Mini UNCG
HL_8BQX_110No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8BQX_0011/2/24:26,
1/2/600:601		Single bulged C
homologous
IL_4V88_384
NA
IL_8BQX_0041/2/42:48,
1/2/431:433		No text annotation
geometric
IL_4V88_387
NA
IL_8BQX_0061/2/58:63,
1/2/87:89		No text annotation
homologous
IL_4V88_389
NA
IL_8BQX_0081/2/109:112,
1/2/302:305		Tandem non-canonical cWW pairs
homologous
IL_4V88_391
NA
IL_8BQX_0191/2/311:316,
1/2/348:355		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_8BQX_0231/2/411:413,
1/2/420:422		Isolated near basepair
homologous
IL_4V88_406
NA
IL_8BQX_0251/2/443:447,
1/2/460:461		C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_8BQX_0281/2/514:516,
1/2/536:543		No text annotation
IL_8BQX_0321/2/562:568,
1/2/575:583		Kink-turn related
homologous
IL_4V88_415
NA
IL_8BQX_0331/2/616:622,
1/2/1104:1105		No text annotation
homologous
IL_4V88_416
NA
IL_8BQX_0401/2/865:866,
1/2/962:965		Major groove platform; stack outside cWW
geometric
IL_6N5P_003
IL_50694.7
IL_8BQX_0461/2/985:990,
1/2/1014:1016		Other IL
homologous
IL_4V88_435
NA
IL_8BQX_0491/2/1041:1044,
1/2/1074:1077		Tandem non-canonical cWW pairs
homologous
IL_4V88_438
NA
IL_8BQX_0511/2/1111:1118,
1/2/1129:1134		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_8BQX_0521/2/1146:1147,
1/2/1630:1632		Single bulged A
homologous
IL_4V88_441
NA
IL_8BQX_0611/2/1268:1270,
1/2/1440:1441		Single bulged U
homologous
IL_4V88_449
NA
IL_8BQX_0771/2/1642:1644,
1/2/1757:1759		Isolated non-canonical cWW pair
geometric
IL_5MWI_002
IL_87907.2
IL_8BQX_0781/2/1644:1647,
1/2/1753:1757		No text annotation
homologous
IL_8CRE_469
IL_11399.2
IL_8BQX_0791/2/1650:1652,
1/2/1748:1750		Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_8BQX_0801/2/1653:1656,
1/2/1744:1747		Double sheared
homologous
IL_4V88_468
NA
IL_8BQX_0811/2/1656:1658,
1/2/1743:1744		Single bulged U
geometric
IL_4V88_469
NA
IL_8BQX_0831/2/1669:1672,
1/2/1729:1732		Double sheared
geometric
IL_1SAQ_002
NA
IL_8BQX_0851/2/1675:1678,
1/2/1723:1726		Tandem non-canonical cWW pairs
geometric
IL_4V88_473
NA
IL_8BQX_0921/BQ/13:15,
1/BS/144:145		Single bulged U
homologous
IL_8C3A_003
NA
IL_8BQX_0931/BQ/27:28,
1/BQ/56:58		No text annotation
homologous
IL_8C3A_004
NA
IL_8BQX_0941/BQ/31:38,
1/BQ/45:53		tSH-tHW-tHH-tHS
geometric
IL_5TBW_005
NA
IL_8BQX_0951/BQ/82:89,
1/BQ/97:103		No text annotation
homologous
IL_8C3A_006
NA
IL_8BQX_0961/BQ/123:124,
1/BQ/144:149		No text annotation
homologous
IL_5TBW_007
NA
IL_8BQX_0971/BQ/125:127,
1/BQ/141:143		Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_8BQX_1031/BQ/337:339,
1/BS/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_8BQX_1041/BQ/376:379,
1/BQ/390:403		No text annotation
homologous
IL_8C3A_015
NA
IL_8BQX_1051/BQ/404:410,
1/BS/13:19		Triple sheared with non-canonical cWW
homologous
IL_8C3A_016
NA
IL_8BQX_1061/BQ/429:431,
1/BQ/628:630		Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_8BQX_1071/BQ/435:495,
1/BQ/618:624		No text annotation
IL_8BQX_1101/BQ/531:538,
1/BQ/553:561		No text annotation
homologous
IL_5TBW_020
NA
IL_8BQX_1111/BQ/668:670,
1/BQ/792:794		Isolated non-canonical cWW pair
homologous
IL_8C3A_023
NA
IL_8BQX_1121/BQ/680:684,
1/BQ/696:700		No text annotation
homologous
IL_5TBW_022
NA
IL_8BQX_1131/BQ/725:728,
1/BQ/741:745		No text annotation
homologous
IL_8C3A_025
NA
IL_8BQX_1141/BQ/752:753,
1/BQ/779:781		Single bulged A
homologous
IL_5TBW_024
NA
IL_8BQX_1151/BQ/755:756,
1/BQ/775:777		Single bulged U
homologous
IL_8C3A_027
NA
IL_8BQX_1161/BQ/758:763,
1/BQ/768:773		No text annotation
homologous
IL_8C3A_028
NA
IL_8BQX_1171/BQ/803:805,
1/BQ/938:940		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_8BQX_1181/BQ/805:809,
1/BQ/931:938		No text annotation
homologous
IL_8C3A_030
NA
IL_8BQX_1191/BQ/833:834,
1/BQ/859:861		Single bulged G
homologous
IL_8C3A_032
NA
IL_8BQX_1201/BQ/834:838,
1/BQ/855:859		Triple sheared
geometric
IL_5J7L_263
IL_50730.2
IL_8BQX_1211/BQ/869:872,
1/BQ/888:890		Major groove platform with extra cWW
homologous
IL_5TBW_031
NA
IL_8BQX_1221/BQ/873:875,
1/BQ/886:887		Single bulged U
homologous
IL_8C3A_035
NA
IL_8BQX_1231/BQ/907:909,
1/BQ/919:923		Multiple bulged bases
geometric
IL_5TBW_033
NA
IL_8BQX_1241/BQ/954:956,
1/BQ/965:967		Isolated non-canonical cWW pair
homologous
IL_5TBW_034
NA
IL_8BQX_1251/BQ/969:970,
1/BQ/1111:1113		No text annotation
homologous
IL_8C3A_038
NA
IL_8BQX_1271/BQ/983:985,
1/BQ/1099:1100		Single bulged G
homologous
IL_8C3A_040
NA
IL_8BQX_1281/BQ/991:997,
1/BQ/1052:1058		7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5TBW_038
NA
IL_8BQX_1301/BQ/999:1004,
1/BQ/1046:1049		C-loop
homologous
IL_5TBW_040
NA
IL_8BQX_1371/BQ/1167:1171,
1/BQ/1328:1332		UAA/GAN
homologous
IL_8C3A_051
NA
IL_8BQX_1381/BQ/1173:1180,
1/BQ/1325:1326		SSU/LSU pseudoknot
homologous
IL_5TBW_049
NA
IL_8BQX_1401/BQ/1187:1194,
1/BQ/1314:1319		No text annotation
geometric
IL_5TBW_051
NA
IL_8BQX_1411/BQ/1194:1205,
1/BQ/1299:1314		No text annotation
geometric
IL_5TBW_052
NA
IL_8BQX_1461/BQ/1376:1378,
1/BQ/1428:1431		No text annotation
homologous
IL_8C3A_061
NA
IL_8BQX_1471/BQ/1385:1387,
1/BQ/1420:1421		Single bulged A
homologous
IL_8C3A_062
NA
IL_8BQX_1481/BQ/1388:1395,
1/BQ/1415:1419		Kink-turn
homologous
IL_8C3A_063
NA
IL_8BQX_1491/BQ/1398:1400,
1/BQ/1411:1412		Single bulged A
homologous
IL_5TBW_060
NA
IL_8BQX_1501/BQ/1444:1450,
1/BQ/2354:2359		No text annotation
homologous
IL_8C3A_065
NA
IL_8BQX_2471/BQ/1501:1505,
1/BQ/1513:1515		C-loop
homologous
IL_8C3A_482
NA
IL_8BQX_1521/BQ/1532:1536,
1/BQ/1585:1590		UAA/GAN
homologous
IL_8C3A_067
NA
IL_8BQX_1531/BQ/1618:1621,
1/BQ/1824:1826		No text annotation
homologous
IL_8C3A_070
NA
IL_8BQX_1571/BQ/1661:1663,
1/BQ/1786:1788		Isolated non-canonical cWW pair
homologous
IL_8C3A_074
NA
IL_8BQX_1581/BQ/1669:1670,
1/BQ/1778:1780		Single bulged C
homologous
IL_8C3A_075
NA
IL_8BQX_1591/BQ/1670:1671,
1/BQ/1776:1778		Single stack bend
geometric
IL_4C7O_002
IL_90729.1
IL_8BQX_1601/BQ/1694:1698,
1/BQ/1747:1752		No text annotation
homologous
IL_8C3A_077
NA
IL_8BQX_1611/BQ/1702:1707,
1/BQ/1737:1743		No text annotation
homologous
IL_5TBW_072
NA
IL_8BQX_1621/BQ/1711:1717,
1/BQ/1727:1733		Kink-turn
homologous
IL_5TBW_073
NA
IL_8BQX_1631/BQ/1883:1889,
1/BQ/2346:2349		No text annotation
homologous
IL_8C3A_080
NA
IL_8BQX_1641/BQ/1895:1897,
1/BQ/2338:2340		No text annotation
homologous
IL_8C3A_081
NA
IL_8BQX_1651/BQ/1898:1901,
1/BQ/2336:2337		Major groove platform; stack outside cWW
homologous
IL_8C3A_082
NA
IL_8BQX_2481/BQ/1898:1906,
1/BQ/2333:2337		No text annotation
homologous
IL_8C3A_484
NA
IL_8BQX_1661/BQ/1901:1906,
1/BQ/2333:2336		Intercalated tWH
geometric
IL_4V9F_062
IL_76758.2
IL_8BQX_1671/BQ/1918:1923,
1/BQ/1928:1934		No text annotation
homologous
IL_8C3A_084
NA
IL_8BQX_1681/BQ/1940:1942,
1/BQ/2106:2108		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_8BQX_1691/BQ/1947:1948,
1/BQ/2098:2101		No text annotation
homologous
IL_5TBW_080
NA
IL_8BQX_1741/BQ/2128:2129,
1/BQ/2323:2325		Single bulged A
homologous
IL_8C3A_087
NA
IL_8BQX_1751/BQ/2156:2161,
1/BQ/2173:2180		Kink-turn related
homologous
IL_5TBW_083
NA
IL_8BQX_1761/BQ/2196:2199,
1/BQ/2245:2246		No text annotation
homologous
IL_8C3A_089
NA
IL_8BQX_1771/BQ/2200:2201,
1/BQ/2241:2244		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_8BQX_1781/BQ/2204:2206,
1/BQ/2237:2238		Single stack bend
homologous
IL_8C3A_091
NA
IL_8BQX_2531/BQ/2204:2210,
1/BQ/2235:2238		No text annotation
IL_8BQX_1791/BQ/2206:2210,
1/BQ/2235:2237		No text annotation
IL_8BQX_1801/BQ/2211:2217,
1/BQ/2228:2234		No text annotation
homologous
IL_8C3A_093
NA
IL_8BQX_1811/BQ/2276:2277,
1/BQ/2307:2310		No text annotation
homologous
IL_8C3A_094
NA
IL_8BQX_1821/BQ/2277:2288,
1/BQ/2304:2307		No text annotation
homologous
IL_8C3A_095
NA
IL_8BQX_1831/BQ/2391:2394,
1/BQ/2986:2988		Major groove platform with extra pair
homologous
IL_5TBW_091
NA
IL_8BQX_1841/BQ/2396:2398,
1/BQ/2981:2984		No text annotation
homologous
IL_8C3A_097
NA
IL_8BQX_1851/BQ/2409:2411,
1/BQ/2811:2812		Single bulged U
homologous
IL_8C3A_098
NA
IL_8BQX_1861/BQ/2412:2413,
1/BQ/2807:2810		Minor groove platform
homologous
IL_5TBW_094
NA
IL_8BQX_1871/BQ/2423:2425,
1/BQ/2604:2607		No text annotation
homologous
IL_8C3A_100
NA
IL_8BQX_1901/BQ/2520:2526,
1/BQ/2584:2587		No text annotation
homologous
IL_8C3A_106
NA
IL_8BQX_1911/BQ/2614:2615,
1/BQ/2625:2627		Single bulged A
homologous
IL_5TBW_098
NA
IL_8BQX_1921/BQ/2666:2668,
1/BQ/2686:2690		No text annotation
homologous
IL_8C3A_108
NA
IL_8BQX_1931/BQ/2718:2721,
1/BQ/2735:2738		Tandem non-canonical cWW pairs
homologous
IL_8C3A_109
NA
IL_8BQX_2561/BQ/2771:2774,
1/BQ/2786:2787		Single stack bend
geometric
IL_4LFB_041
IL_90729.1
IL_8BQX_1951/BQ/2823:2824,
1/BQ/2865:2867		Major groove platform
homologous
IL_5TBW_102
NA
IL_8BQX_1961/BQ/2824:2826,
1/BQ/2863:2865		Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_8BQX_1971/BQ/2826:2828,
1/BQ/2862:2863		Major groove platform
geometric
IL_5TBW_104
NA
IL_8BQX_1981/BQ/2828:2830,
1/BQ/2858:2862		Major groove minor groove platform with extra cWW
homologous
IL_5TBW_105
NA
IL_8BQX_1991/BQ/2835:2839,
1/BQ/2849:2853		No text annotation
homologous
IL_8C3A_114
NA
IL_8BQX_2001/BQ/2876:2877,
1/BQ/2949:2951		Major groove platform
homologous
IL_8C3A_115
NA
IL_8BQX_2011/BQ/2879:2881,
1/BQ/2943:2947		No text annotation
homologous
IL_8C3A_116
NA
IL_8BQX_2021/BQ/2881:2882,
1/BQ/2940:2943		No text annotation
homologous
IL_8C3A_117
NA
IL_8BQX_2031/BQ/2889:2891,
1/BQ/2912:2914		Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_8BQX_2571/BQ/2889:2892,
1/BQ/2909:2914		No text annotation
homologous
IL_8P9A_338
IL_07469.2
IL_8BQX_2041/BQ/2891:2892,
1/BQ/2909:2912		Major groove platform with intercalation
homologous
IL_5TBW_111
NA
IL_8BQX_2051/BQ/2918:2920,
1/BQ/2926:2928		Isolated non-canonical cWW pair
geometric
IL_5TBW_112
NA
IL_8BQX_2061/BQ/2960:2961,
1/BQ/2970:2972		Single bulged A
geometric
IL_7RQB_101
NA
IL_8BQX_2071/BQ/3004:3007,
1/BQ/3139:3144		Double sheared
homologous
IL_8C3A_123
NA
IL_8BQX_2081/BQ/3012:3014,
1/BQ/3040:3042		Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_8BQX_2091/BQ/3018:3025,
1/BQ/3030:3036		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_8BQX_2101/BQ/3047:3051,
1/BQ/3091:3094		Major groove minor groove platform with tHH
homologous
IL_8C3A_126
NA
IL_8BQX_2111/BQ/3054:3059,
1/BQ/3084:3088		UAA/GAN related
homologous
IL_8C3A_127
NA
IL_8BQX_2121/BQ/3063:3064,
1/BQ/3077:3080		No text annotation
homologous
IL_8C3A_128
NA
IL_8BQX_2131/BQ/3103:3107,
1/BQ/3127:3131		UAA/GAN
homologous
IL_8C3A_129
NA
IL_8BQX_2161/BQ/3168:3170,
1/BQ/3280:3282		Isolated non-canonical cWW pair
homologous
IL_5TBW_122
NA
IL_8BQX_2231/BQ/3300:3303,
1/BQ/3311:3314		Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_8BQX_2261/BQ/3328:3330,
1/BQ/3373:3378		No text annotation
homologous
IL_8C3A_138
NA
IL_8BQX_2271/BQ/3332:3337,
1/BQ/3367:3371		No text annotation
homologous
IL_8C3A_139
NA
IL_8BQX_2281/BQ/3340:3342,
1/BQ/3363:3364		Single bulged U
homologous
IL_8C3A_140
NA
IL_8BQX_2291/BQ/3342:3345,
1/BQ/3360:3363		Double sheared; A in syn
geometric
IL_5TBW_135
NA
IL_8BQX_2381/BR/84:87,
1/BR/94:96		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_8BQX_2391/BS/64:66,
1/BS/93:96		Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA
IL_8BQX_2401/BS/68:69,
1/BS/89:91		Single bulged U
homologous
IL_5TBW_146
NA

Problematic loops

#loop idProblemSequence
IL_8BQX_002Isolated non-canonical cWW pair
IL_8BQX_003Triple sheared related
IL_8BQX_005Minor groove platform
IL_8BQX_007No text annotation
IL_8BQX_009Multiple bulged bases
IL_8BQX_010No text annotation
IL_8BQX_011tWH-tWH-tHW-tHW
IL_8BQX_012No text annotation
IL_8BQX_013Double sheared
IL_8BQX_014Major groove platform with extra cWW
IL_8BQX_015Isolated non-canonical cWW pair
IL_8BQX_016Single bulged A
IL_8BQX_017No text annotation
IL_8BQX_018Single bulged U
IL_8BQX_020No text annotation
IL_8BQX_021No text annotation
IL_8BQX_022Isolated cWH basepair
IL_8BQX_024Single bulged U
IL_8BQX_026Single bulged G
IL_8BQX_027Single bulged A
IL_8BQX_029Double sheared
IL_8BQX_030Multiple bulged bases
IL_8BQX_031Single bulged U
IL_8BQX_034Isolated non-canonical cWW pair
IL_8BQX_035tSH-tHW-tHS
IL_8BQX_036Isolated non-canonical cWW pair
IL_8BQX_241Single stack bend
IL_8BQX_037Major groove minor groove platform; mini C-loop
IL_8BQX_038Isolated non-canonical cWW pair
IL_8BQX_039No text annotation
IL_8BQX_242Isolated non-canonical cWW pair
IL_8BQX_041Isolated non-canonical cWW pair
IL_8BQX_260Single bulged U
IL_8BQX_243Isolated non-canonical cWW pair
IL_8BQX_042Tandem non-canonical cWW pairs
IL_8BQX_043Tandem non-canonical cWW pairs
IL_8BQX_044Tandem non-canonical cWW pairs
IL_8BQX_045Kink-turn related
IL_8BQX_047tSH-tHW-tHS
IL_8BQX_048No text annotation
IL_8BQX_050No text annotation
IL_8BQX_053Single bulged G
IL_8BQX_054C-loop
IL_8BQX_055Isolated non-canonical cWW pair
IL_8BQX_056Minor groove platform
IL_8BQX_057Isolated non-canonical cWW pair
IL_8BQX_058No text annotation
IL_8BQX_244No text annotation
IL_8BQX_059No text annotation
IL_8BQX_060No text annotation
IL_8BQX_062Tandem non-canonical cWW pairs
IL_8BQX_245Isolated cWS basepair
IL_8BQX_246No text annotation
IL_8BQX_063Minor groove platform with extra cWW
IL_8BQX_064Single bulged A
IL_8BQX_065Isolated cWH basepair
IL_8BQX_066Minor groove platform
IL_8BQX_067Isolated non-canonical cWW pair
IL_8BQX_068Minor groove platform
IL_8BQX_069No text annotation
IL_8BQX_070No text annotation
IL_8BQX_071No text annotation
IL_8BQX_072180 degree turn
IL_8BQX_073Tandem non-canonical cWW pairs
IL_8BQX_074No text annotation
IL_8BQX_075No text annotation
IL_8BQX_076No text annotation
IL_8BQX_082Isolated non-canonical cWW pair
IL_8BQX_084Isolated non-canonical cWW pair
IL_8BQX_086Triple sheared
IL_8BQX_087Isolated non-canonical cWW pair
IL_8BQX_088No text annotation
IL_8BQX_089Single stack bend
IL_8BQX_090No text annotation
IL_8BQX_091Single bulged C
IL_8BQX_098No text annotation
IL_8BQX_099No text annotation
IL_8BQX_100Isolated non-canonical cWW pair
IL_8BQX_101No text annotation
IL_8BQX_102Single bulged U
IL_8BQX_108Single bulged A
IL_8BQX_109No text annotation
IL_8BQX_126No text annotation
IL_8BQX_129Minor groove platform
IL_8BQX_131Tandem non-canonical cWW pairs
IL_8BQX_132Isolated non-canonical cWW pair
IL_8BQX_133Isolated non-canonical cWW with bulges
IL_8BQX_134Isolated non-canonical cWW pair
IL_8BQX_135Single bulged G
IL_8BQX_136Isolated non-canonical cWW pair
IL_8BQX_139Single bulged U
IL_8BQX_142Single bulged U
IL_8BQX_143Kink-turn
IL_8BQX_144No text annotation
IL_8BQX_145Major groove platform with extra cWW
IL_8BQX_151No text annotation
IL_8BQX_154No text annotation
IL_8BQX_155No text annotation
IL_8BQX_156Triple sheared
IL_8BQX_249No text annotation
IL_8BQX_261No text annotation
IL_8BQX_170No text annotation
IL_8BQX_250No text annotation
IL_8BQX_171No text annotation
IL_8BQX_251No text annotation
IL_8BQX_172tSH-tHW
IL_8BQX_173Isolated cWH basepair
IL_8BQX_252No text annotation
IL_8BQX_188Single stack bend
IL_8BQX_254No text annotation
IL_8BQX_189No text annotation
IL_8BQX_255Partly complementary
IL_8BQX_194Other IL
IL_8BQX_214Single stack bend
IL_8BQX_258No text annotation
IL_8BQX_215Isolated non-canonical cWW pair
IL_8BQX_217Single bulged A
IL_8BQX_218No text annotation
IL_8BQX_219Single bulged U
IL_8BQX_220No text annotation
IL_8BQX_221Isolated non-canonical cWW pair
IL_8BQX_222Tandem non-canonical cWW pairs
IL_8BQX_224Single bulged U
IL_8BQX_225Single bulged U
IL_8BQX_230Multiple bulged bases
IL_8BQX_231Single bulged A
IL_8BQX_232No text annotation
IL_8BQX_259No text annotation
IL_8BQX_233Single stack bend
IL_8BQX_234Minor groove platform
IL_8BQX_235Single stack bend
IL_8BQX_236Symmetric double minor groove platform
IL_8BQX_2378x7 Sarcin-Ricin; G-bulge

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8BQX_0011/2/41:42,
1/2/433:439,
1/2/464:466		No text annotation
geometric
J3_8C3A_082
NA
J3_8BQX_0321/2/41:48,
1/2/431:439,
1/2/464:466		No text annotation
homologous
J3_8P9A_069
J3_46317.4
J3_8BQX_0021/2/633:635,
1/2/861:865,
1/2/965:966		No text annotation
geometric
J3_4V88_080
NA
J3_8BQX_0341/2/633:635,
1/2/861:866,
1/2/962:966		No text annotation
homologous
J3_8P9A_072
J3_17385.4
J3_8BQX_0041/2/881:884,
1/2/928:936,
1/2/943:947		No text annotation
homologous
J3_4V88_033
NA
J3_8BQX_0141/BQ/113:123,
1/BQ/149:158,
1/BQ/263:267		No text annotation
homologous
J3_8C3A_001
NA
J3_8BQX_0361/BQ/113:124,
1/BQ/144:158,
1/BQ/263:267		No text annotation
J3_8BQX_0371/BQ/185:189,
1/BQ/205:214,
1/BQ/226:231		No text annotation
homologous
J3_8P9A_044
J3_75408.1
J3_8BQX_0381/BQ/340:356,
1/BQ/363:368,
1/BS/21:24		No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_8BQX_0151/BQ/369:376,
1/BQ/403:404,
1/BS/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_8BQX_0391/BQ/369:379,
1/BQ/390:404,
1/BS/19:20		No text annotation
homologous
J3_8C3A_049
NA
J3_8BQX_0171/BQ/814:820,
1/BQ/905:907,
1/BQ/923:926		No text annotation
homologous
J3_8C3A_003
NA
J3_8BQX_0181/BQ/828:831,
1/BQ/863:867,
1/BQ/892:897		No text annotation
homologous
J3_5TBW_005
NA
J3_8BQX_0191/BQ/986:987,
1/BQ/1062:1066,
1/BQ/1092:1098		No text annotation
homologous
J3_5TBW_006
NA
J3_8BQX_0211/BQ/1479:1485,
1/BQ/1857:1859,
1/BQ/1871:1874		No text annotation
homologous
J3_8C3A_006
NA
J3_8BQX_0221/BQ/1488:1491,
1/BQ/1837:1843,
1/BQ/1852:1854		No text annotation
homologous
J3_8C3A_007
NA
J3_8BQX_0231/BQ/1526:1531,
1/BQ/1591:1595,
1/BQ/1612:1613		No text annotation
homologous
J3_5TBW_010
NA
J3_8BQX_0401/BQ/1537:1542,
1/BQ/1551:1560,
1/BQ/1579:1584		No text annotation
J3_8BQX_0411/BQ/1654:1658,
1/BQ/1791:1792,
1/BQ/1796:1801		No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_8BQX_0251/BQ/2432:2435,
1/BQ/2512:2517,
1/BQ/2590:2597		No text annotation
homologous
J3_8C3A_008
NA
J3_8BQX_0261/BQ/2529:2532,
1/BQ/2547:2563,
1/BQ/2578:2581		No text annotation
homologous
J3_8P9A_060
J3_28639.1
J3_8BQX_0421/BQ/2651:2653,
1/BQ/2754:2765,
1/BQ/2793:2798		No text annotation
homologous
J3_8C3A_056
NA
J3_8BQX_0271/BQ/2664:2666,
1/BQ/2690:2692,
1/BQ/2701:2706		No text annotation
homologous
J3_8C3A_010
NA
J3_8BQX_0281/BQ/2886:2889,
1/BQ/2914:2916,
1/BQ/2930:2936		No text annotation
homologous
J3_5TBW_014
NA
J3_8BQX_0431/BQ/3171:3176,
1/BQ/3212:3220,
1/BQ/3265:3279		No text annotation
homologous
J3_8P9A_064
J3_03190.1
J3_8BQX_0291/BQ/3298:3300,
1/BQ/3314:3318,
1/BQ/3388:3390		No text annotation
homologous
J3_5TBW_015
NA
J3_8BQX_0311/BS/44:45,
1/BS/58:64,
1/BS/96:100		No text annotation
homologous
J3_8P9A_067
J3_35667.2
J4_8BQX_0021/2/622:624,
1/2/975:980,
1/2/1021:1032,
1/2/1103:1104		No text annotation
homologous
J4_8C3A_022
NA
J4_8BQX_0031/BQ/112:113,
1/BQ/267:272,
1/BQ/293:299,
1/BQ/316:319		No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_8BQX_0041/BQ/185:189,
1/BQ/205:208,
1/BQ/212:214,
1/BQ/226:231		No text annotation
homologous
J4_8P9A_013
J4_12410.1
J4_8BQX_0051/BQ/1451:1457,
1/BQ/1475:1476,
1/BQ/1877:1880,
1/BQ/2352:2353		No text annotation
homologous
J4_8C3A_003
NA
J4_8BQX_0061/BQ/1492:1496,
1/BQ/1520:1525,
1/BQ/1614:1615,
1/BQ/1829:1836		No text annotation
homologous
J4_8P9A_015
J4_69051.6
J4_8BQX_0071/BQ/1674:1675,
1/BQ/1693:1694,
1/BQ/1752:1753,
1/BQ/1772:1773		No text annotation
homologous
J4_8P9A_016
J4_24280.2
J4_8BQX_0081/BQ/2130:2134,
1/BQ/2146:2150,
1/BQ/2186:2190,
1/BQ/2317:2322		No text annotation
homologous
J4_8P9A_017
J4_07509.2
J4_8BQX_0091/BQ/2192:2194,
1/BQ/2248:2249,
1/BQ/2267:2276,
1/BQ/2310:2315		No text annotation
homologous
J4_8C3A_007
NA
J4_8BQX_0101/BQ/2654:2658,
1/BQ/2712:2716,
1/BQ/2740:2742,
1/BQ/2751:2753		No text annotation
homologous
J4_8P9A_019
J4_04930.6
J4_8BQX_0111/BQ/3010:3012,
1/BQ/3042:3043,
1/BQ/3098:3100,
1/BQ/3134:3136		No text annotation
homologous
J4_8P9A_020
J4_65356.1
J5_8BQX_0011/2/31:35,
1/2/473:479,
1/2/509:516,
1/2/536:546,
1/2/592:595		No text annotation
J5_8BQX_0021/2/54:57,
1/2/90:97,
1/2/386:388,
1/2/409:411,
1/2/422:426		No text annotation
homologous
J5_8P9A_017
J5_59910.6
J5_8BQX_0061/BQ/20:22,
1/BS/35:42,
1/BS/102:107,
1/BS/115:116,
1/BS/137:139		No text annotation
homologous
J5_8C3A_001
NA
J5_8BQX_0071/BQ/658:663,
1/BQ/799:802,
1/BQ/941:944,
1/BQ/1375:1376,
1/BQ/1431:1437		No text annotation
homologous
J5_8C3A_002
NA
J5_8BQX_0081/BQ/675:678,
1/BQ/702:706,
1/BQ/713:721,
1/BQ/749:751,
1/BQ/782:787		No text annotation
homologous
J5_8P9A_012
J5_23272.1
J5_8BQX_0091/BQ/1906:1914,
1/BQ/1938:1939,
1/BQ/2109:2110,
1/BQ/2114:2122,
1/BQ/2331:2333		No text annotation
homologous
J5_8C3A_004
NA
J5_8BQX_0101/BQ/2399:2406,
1/BQ/2815:2823,
1/BQ/2867:2876,
1/BQ/2951:2957,
1/BQ/2975:2980		No text annotation
J5_8BQX_0111/BQ/2416:2419,
1/BQ/2611:2614,
1/BQ/2627:2628,
1/BQ/2650:2651,
1/BQ/2798:2804		No text annotation
homologous
J5_8P9A_015
J5_08912.1
J6_8BQX_0011/BQ/22:27,
1/BQ/58:68,
1/BQ/75:79,
1/BQ/106:110,
1/BQ/321:331,
1/BS/32:35		No text annotation
J6_8BQX_0021/BQ/2416:2419,
1/BQ/2611:2614,
1/BQ/2627:2628,
1/BQ/2650:2653,
1/BQ/2754:2765,
1/BQ/2793:2804		No text annotation
J7_8BQX_0011/BQ/949:954,
1/BQ/967:968,
1/BQ/1114:1117,
1/BQ/1141:1146,
1/BQ/1157:1161,
1/BQ/1338:1339,
1/BQ/1365:1370		No text annotation

Problematic loops

#loop idProblemSequence
J3_8BQX_033No text annotation
J3_8BQX_003No text annotation
J3_8BQX_005No text annotation
J3_8BQX_006No text annotation
J3_8BQX_007No text annotation
J3_8BQX_008No text annotation
J3_8BQX_009No text annotation
J3_8BQX_010No text annotation
J3_8BQX_011No text annotation
J3_8BQX_012No text annotation
J3_8BQX_035No text annotation
J3_8BQX_013No text annotation
J3_8BQX_016No text annotation
J3_8BQX_020No text annotation
J3_8BQX_024No text annotation
J3_8BQX_030No text annotation
J4_8BQX_001No text annotation
J5_8BQX_012No text annotation
J5_8BQX_003No text annotation
J5_8BQX_013No text annotation
J5_8BQX_004No text annotation
J5_8BQX_005No text annotation

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