HL_8BQX_014

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQX_014 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1896

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8BQX|1|2|A|520
8BQX|1|2|A|521
8BQX|1|2|U|522
8BQX|1|2|G|523
8BQX|1|2|U|524
8BQX|1|2|A|525
8BQX|1|2|A|526
8BQX|1|2|A|527
8BQX|1|2|U|528
8BQX|1|2|A|529
8BQX|1|2|C|530
8BQX|1|2|C|531
8BQX|1|2|U|532

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain W

40S ribosomal protein S9-A

Chain d

40S ribosomal protein S24-A