HL_8BQX_016

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGGCCGGUCGGAUUUCCA

Length

18 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BQX|1|2|U|650
8BQX|1|2|G|651
8BQX|1|2|G|652
8BQX|1|2|C|653
8BQX|1|2|C|654
8BQX|1|2|G|655
8BQX|1|2|G|656
8BQX|1|2|U|657
8BQX|1|2|C|658
8BQX|1|2|G|676
8BQX|1|2|G|677
8BQX|1|2|A|678
8BQX|1|2|U|679
8BQX|1|2|U|680
8BQX|1|2|U|681
8BQX|1|2|C|682
8BQX|1|2|C|683
8BQX|1|2|A|684

Current chains

Chain 2

18S rRNA

Nearby chains

Chain W

40S ribosomal protein S9-A